RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SLC40A1Q9NP59 571 aa18.1■□□□□ 0.49
HDAC6-231ENST00000488905 UBP1Q9NZI7 540 aa18.1■□□□□ 0.49
HDAC6-231ENST00000488905 KCTD3Q9Y597 815 aa18.1■□□□□ 0.49
HDAC6-231ENST00000488905 NBPF19A0A087WUL8 3843 aa18.1■□□□□ 0.49
HDAC6-231ENST00000488905 KIF1CO43896 1103 aaKnown RBP18.09■□□□□ 0.49
HDAC6-231ENST00000488905 KIAA0754O94854 1291 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 NDUFA10O95299 355 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 VCLP18206 1134 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 IDSP22304 550 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 PTPN3P26045 913 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 HMGCLP35914 325 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 GTF2H3Q13889 308 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 SEPT6Q14141 434 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 PRKD1Q15139 912 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-231ENST00000488905 LACTB2Q53H82 288 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-231ENST00000488905 ODF2Q5BJF6 829 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 COLEC12Q5KU26 742 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 RASGRP3Q8IV61 690 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 GALNT6Q8NCL4 622 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 RNF25Q96BH1 459 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-231ENST00000488905 ZDHHC12Q96GR4 267 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 ABHD17AQ96GS6 310 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 TEKT5Q96M29 485 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 TRIM10Q9UDY6 481 aa18.09■□□□□ 0.49
HDAC6-231ENST00000488905 GOLGA6L3A6NEY3 463 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 FGF5P12034 268 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 FOXK1P85037 733 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 TMEM115Q12893 351 aaPredicted RBP18.08■□□□□ 0.48
HDAC6-231ENST00000488905 NOMO1Q15155 1222 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 CACHD1Q5VU97 1274 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 IRGCQ6NXR0 463 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 FAM92BQ6ZTR7 304 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 RHOT1Q8IXI2 618 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 GDAP1Q8TB36 358 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 KLHL6Q8WZ60 621 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 ELMO2Q96JJ3 720 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 ABHD10Q9NUJ1 306 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 SPTLC3Q9NUV7 552 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 ZNHIT6Q9NWK9 470 aaKnown RBP18.08■□□□□ 0.48
HDAC6-231ENST00000488905 DDX56Q9NY93 547 aaKnown RBP18.08■□□□□ 0.48
HDAC6-231ENST00000488905 EPHA6Q9UF33 1036 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 LNPEPQ9UIQ6 1025 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 WDR37Q9Y2I8 494 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 PCDHB3Q9Y5E6 796 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 KCNMB2Q9Y691 235 aa18.08■□□□□ 0.48
HDAC6-231ENST00000488905 USP9XQ93008 2570 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 CD68P34810 354 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 HALP42357 657 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 NR2C2P49116 596 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 CYB5D1Q6P9G0 228 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 MFSD7Q6UXD7 560 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 PPP1R3BQ86XI6 285 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 TTC30BQ8N4P2 665 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 GPR150Q8NGU9 434 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 BRSK1Q8TDC3 778 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 TFB1MQ8WVM0 346 aaKnown RBP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 ZCCHC2Q9C0B9 1178 aaKnown RBP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 RAB33BQ9H082 229 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 TRABDQ9H4I3 376 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 IL26Q9NPH9 171 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 FAM153AQ9UHL3 310 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 TP53TG5Q9Y2B4 290 aa18.07■□□□□ 0.48
HDAC6-231ENST00000488905 SPTAN1Q13813 2472 aaKnown RBP18.07■□□□□ 0.48
HDAC6-231ENST00000488905 TNRC6AQ8NDV7 1962 aaKnown RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 RP1L1Q8IWN7 2480 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 LOC285095A0A1B0GVY8 99 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 GPR39O43194 453 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 SPAG6O75602 509 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 TNNT1P13805 278 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 NELFEP18615 380 aaKnown RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 NFKB1P19838 968 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 SPAM1P38567 509 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 CDKN2BP42772 138 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 SLC1A1P43005 524 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 WNT3AP56704 352 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 PPP1CAP62136 330 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 DMPKQ09013 629 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 WASHC5Q12768 1159 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 ZDHHC20Q5W0Z9 365 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 KDELC1Q6UW63 502 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 BZW1Q7L1Q6 419 aaKnown RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 DTX3LQ8TDB6 740 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 TTC25Q96NG3 672 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 CHP1Q99653 195 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 ANP32EQ9BTT0 268 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 SAE1Q9UBE0 346 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 KCND3Q9UK17 655 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 POLHQ9Y253 713 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 HYOU1Q9Y4L1 999 aa18.06■□□□□ 0.48
HDAC6-231ENST00000488905 USP9YO00507 2555 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-231ENST00000488905 SPTBP11277 2137 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 SPOPO43791 374 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 KCNJ13O60928 360 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 FURINP09958 794 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 PECAM1P16284 738 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-231ENST00000488905 FECHP22830 423 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 CHRNA4P43681 627 aa18.05■□□□□ 0.48
HDAC6-231ENST00000488905 TNNT3P45378 269 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-231ENST00000488905 SRSF1Q07955 248 aaKnown RBP eCLIP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms