RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 SGSM3Q96HU1 749 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 WDR92Q96MX6 357 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 VPS35Q96QK1 796 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 ELF4Q99607 663 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 EBNA1BP2Q99848 306 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 BOCQ9BWV1 1114 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 CLPBQ9H078 707 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GAREM1Q9H706 876 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 EPB41L5Q9HCM4 733 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 RRAGDQ9NQL2 400 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GDF3Q9NR23 364 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PHPT1Q9NRX4 125 aaPredicted RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 RAD18Q9NS91 495 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 TM7SF3Q9NS93 570 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DNAAF2Q9NVR5 837 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 ATXN10Q9UBB4 475 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 GULP1Q9UBP9 304 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 APOBEC2Q9Y235 224 aaKnown RBP6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PLEKHM1Q9Y4G2 1056 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 DGKBQ9Y6T7 804 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PTPRBP23467 1997 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 SPTBP11277 2137 aa6.91□□□□□ -1.3
LIMD1-204ENST00000474665 PRSS38A1L453 326 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ERVH48-1M5A8F1 160 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SMAPO00193 183 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 AP3B1O00203 1094 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CACNB4O00305 520 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 TNFRSF10CO14798 259 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CHUKO15111 745 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 NUAK1O60285 661 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 OR1I1O60431 355 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SDC3O75056 442 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PIAS2O75928 621 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SLC25A14O95258 325 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 VAPBO95292 243 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 IVLP07476 585 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 RHOXF2BP0C7M4 288 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 MYBL2P10244 700 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 JUNDP17535 347 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 EPHA8P29322 1005 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 HADHAP40939 763 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 HK3P52790 923 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 THOP1P52888 689 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 RIPPLY3P57055 190 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 C21orf59P57076 290 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CXADRP78310 365 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SARNPP82979 210 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PDE1BQ01064 536 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CACNG1Q06432 222 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PDIA2Q13087 525 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CRYMQ14894 314 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 TCEA2Q15560 299 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 HIF1AQ16665 826 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF658BQ4V348 819 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PYCR3Q53H96 274 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF789Q5FWF6 425 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ARMC3Q5W041 872 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ZDHHC20Q5W0Z9 365 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 KIAA0930Q6ICG6 404 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 TRMT10BQ6PF06 316 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 DOK6Q6PKX4 331 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ENPP7Q6UWV6 458 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 UNC5AQ6ZN44 842 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CENPUQ71F23 418 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 NLRP9Q7RTR0 991 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SNX20Q7Z614 316 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SERPINA9Q86WD7 417 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 NRROSQ86YC3 692 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 GATAD2AQ86YP4 633 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 DCP2Q8IU60 420 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 HID1Q8IV36 788 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ANKMY2Q8IV38 441 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PHACTR4Q8IZ21 702 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PDIK1LQ8N165 341 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PPHLN1Q8NEY8 458 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 OR56A4Q8NGH8 313 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ZNF669Q96BR6 464 aaPredicted RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 STAMBPL1Q96FJ0 436 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 RHOXF2Q9BQY4 288 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 LRRC61Q9BV99 259 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ZDHHC5Q9C0B5 715 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 RAB17Q9H0T7 212 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 TMEM168Q9H0V1 697 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 OR2AG1Q9H205 316 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ASB8Q9H765 288 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 ANKZF1Q9H8Y5 726 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 TRIM39Q9HCM9 518 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CYP4F12Q9HCS2 524 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 DNAJC28Q9NX36 388 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 VPS18Q9P253 973 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SLC17A6Q9P2U8 582 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 KLQ9UEF7 1012 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SLC23A2Q9UGH3 650 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 APPL1Q9UKG1 709 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 SUFUQ9UMX1 484 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 CHMP2BQ9UQN3 213 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 BTBD3Q9Y2F9 522 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 UTP11Q9Y3A2 253 aaKnown RBP6.9□□□□□ -1.3
LIMD1-204ENST00000474665 PRKAB1Q9Y478 270 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 MAD1L1Q9Y6D9 718 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms