RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 RNF186Q9NXI6 227 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 NPHS1O60500 1241 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 ZMPSTE24O75844 475 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 DGUOKQ16854 277 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 EOGTQ5NDL2 527 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 CHST15Q7LFX5 561 aaPredicted RBP17.11■□□□□ 0.33
PHRF1-202ENST00000413872 SLC35B2Q8TB61 432 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 TDRD1Q9BXT4 1180 aaKnown RBP17.11■□□□□ 0.33
PHRF1-202ENST00000413872 SRMSQ9H3Y6 488 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 PIGVQ9NUD9 493 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 MAPK12P53778 367 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 VPS26BQ4G0F5 336 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 TRIQKQ629K1 86 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 ARHGAP36Q6ZRI8 547 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 FAM92BQ6ZTR7 304 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 LDB1Q86U70 411 aaPredicted RBP17.11■□□□□ 0.33
PHRF1-202ENST00000413872 TBC1D21Q8IYX1 336 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 GJD3Q8N144 294 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 SLC43A3Q8NBI5 491 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 ZMAT2Q96NC0 199 aaKnown RBP17.11■□□□□ 0.33
PHRF1-202ENST00000413872 WDR26Q9H7D7 661 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 SALL4Q9UJQ4 1053 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 AGRPO00253 132 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 PLIN3O60664 434 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 TBX18O95935 607 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 KLF10Q13118 480 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 INAVAQ3KP66 663 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 SMYD1Q8NB12 490 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 MIPEPQ99797 713 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 ZSCAN5AQ9BUG6 496 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 CXorf56Q9H5V9 222 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 CCSER2Q9H7U1 834 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 GKN1Q9NS71 199 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 CALML5Q9NZT1 146 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 CNTN6Q9UQ52 1028 aa17.11■□□□□ 0.33
PHRF1-202ENST00000413872 EFCAB10A6NFE3 127 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 IFNGP01579 166 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 SYN1P17600 705 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 IGFALSP35858 605 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ELF3P78545 371 aaPredicted RBP17.1■□□□□ 0.33
PHRF1-202ENST00000413872 HEPACAMQ14CZ8 416 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 LARS2Q15031 903 aaKnown RBP17.1■□□□□ 0.33
PHRF1-202ENST00000413872 NEDD8Q15843 81 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 SLC35G1Q2M3R5 365 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 SLC39A4Q6P5W5 647 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 TTLQ8NG68 377 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 SIPA1Q96FS4 1042 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 LMLNQ96KR4 655 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 RAD9AQ99638 391 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ITM2CQ9NQX7 267 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 MTMR11A4FU01 709 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ATXN1P54253 815 aaKnown RBP17.1■□□□□ 0.33
PHRF1-202ENST00000413872 OR8H2Q8N162 312 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 BRINP2Q9C0B6 783 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ARHGAP39Q9C0H5 1083 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ADAMTSL3P82987 1691 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 INPPL1O15357 1258 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 MFN2O95140 757 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ZNF30P17039 623 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 TAS2R41P59536 307 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 TXNDC8Q6A555 127 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 PEX5LQ8IYB4 626 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 IRF7Q92985 503 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 TWNKQ96RR1 684 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 AGAP2Q99490 1192 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 TFB2MQ9H5Q4 396 aaKnown RBP17.1■□□□□ 0.33
PHRF1-202ENST00000413872 ZDHHC3Q9NYG2 299 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 PRG2P13727 222 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 PDZK1Q5T2W1 519 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 CPNE9Q8IYJ1 553 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 RASSF5Q8WWW0 418 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 AUTS2Q8WXX7 1259 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 MAT2BQ9NZL9 334 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 GABRQQ9UN88 632 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 C15orf41Q9Y2V0 281 aa17.1■□□□□ 0.33
PHRF1-202ENST00000413872 AHDC1Q5TGY3 1603 aaPredicted RBP17.09■□□□□ 0.33
PHRF1-202ENST00000413872 SCN2BO60939 215 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 FAM155BO75949 473 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ITPKBP27987 946 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 USP46P62068 366 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 CNTD1Q8N815 330 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ZNF296Q8WUU4 475 aaPredicted RBP17.09■□□□□ 0.33
PHRF1-202ENST00000413872 RETREG1Q9H6L5 497 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 TRBV23OR9-2A0A075B6M9 112 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 IRGMA1A4Y4 181 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 WWP2O00308 870 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 MGRN1O60291 552 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 RABGGTBP53611 331 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ARL13AQ5H913 290 aaPredicted RBP17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ARMC4Q5T2S8 1044 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ABRAXAS1Q6UWZ7 409 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 SAPCD2Q86UD0 394 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ALYREFQ86V81 257 aaKnown RBP17.09■□□□□ 0.33
PHRF1-202ENST00000413872 C16orf70Q9BSU1 422 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 ZNF446Q9NWS9 450 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 KIF13AQ9H1H9 1805 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 PIRO00625 290 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 OR1F1O43749 312 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 KERAO60938 352 aa17.09■□□□□ 0.33
PHRF1-202ENST00000413872 EDNRBP24530 442 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms