RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.86□□□□□ -0.355e-12■■■■■ 28.5
SNX1-201ENST00000261889 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 CNOT11Q9UKZ1 510 aaKnown RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 ZNF451Q9Y4E5 1061 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 NCAM2O15394 837 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 CD3EAPO15446 510 aaKnown RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 LRATO95237 230 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 STAU1O95793 577 aaKnown RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 HPCAL1P37235 193 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 TPTEP56180 551 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 KCNAB2Q13303 367 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 NR6A1Q15406 480 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 ATP6AP1LQ52LC2 224 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 TMTC4Q5T4D3 741 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 MARC1Q5VT66 337 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 KIAA0930Q6ICG6 404 aaPredicted RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 BLOC1S3Q6QNY0 202 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 Q6ZPB1 254 aaPredicted RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 HEATR4Q86WZ0 1026 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 FAM126BQ8IXS8 530 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 CADM3Q8N126 398 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 CLIP4Q8N3C7 705 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 PAF1Q8N7H5 531 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 PNPT1Q8TCS8 783 aaKnown RBP12.86□□□□□ -0.35
SNX1-201ENST00000261889 IGSF8Q969P0 613 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 RTP3Q9BQQ7 232 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 APOL5Q9BWW9 433 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 RAD21L1Q9H4I0 556 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 CD274Q9NZQ7 290 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 ZNF229Q9UJW7 825 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 BAG5Q9UL15 447 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 PCDHGA11Q9Y5H2 935 aa12.86□□□□□ -0.35
SNX1-201ENST00000261889 MIA3Q5JRA6 1907 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 TMEM221A6NGB7 291 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 M0R129 80 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SLC22A3O75751 556 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 ZNF37AP17032 561 aaPredicted RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 PFKLP17858 780 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 NR4A2P43354 598 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 POLR2JP52435 117 aaKnown RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 CD47Q08722 323 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CCL14Q16627 93 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SYT16Q17RD7 645 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 DCLRE1AQ6PJP8 1040 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 MBOAT1Q6ZNC8 495 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 DCP1BQ8IZD4 617 aaKnown RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 DPF3Q92784 378 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SMOC2Q9H3U7 446 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CNGB3Q9NQW8 809 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 GDAP2Q9NXN4 497 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 VAPAQ9P0L0 249 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 TCRBV5S2A0A599 114 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 GSTA4O15217 222 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SNX2O60749 519 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CST1P01037 141 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 MYCLP1P12525 358 aaPredicted RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 DCKP27707 260 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 HOXD12P35452 270 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CBLBQ13191 982 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 PTPRNQ16849 979 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CATSPEREQ5SY80 951 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 C8orf82Q6P1X6 216 aaPredicted RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 RNF19BQ6ZMZ0 732 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 CNTN4Q8IWV2 1026 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SPARTQ8N0X7 666 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 OR4K2Q8NGD2 314 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 EEF1AKMT1Q8WVE0 214 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 UHRF1Q96T88 793 aaPredicted RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 RNF167Q9H6Y7 350 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 ENTPD7Q9NQZ7 604 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 GID8Q9NWU2 228 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 SUN2Q9UH99 717 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 PRG3Q9Y2Y8 225 aaPredicted RBP12.85□□□□□ -0.35
SNX1-201ENST00000261889 SLC30A1Q9Y6M5 507 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 FRMPD3Q5JV73 1810 aa12.85□□□□□ -0.35
SNX1-201ENST00000261889 PRKD3O94806 890 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 NADKO95544 446 aaPredicted RBP12.84□□□□□ -0.35
SNX1-201ENST00000261889 OXSR1O95747 527 aaPredicted RBP12.84□□□□□ -0.35
SNX1-201ENST00000261889 GLP2RO95838 553 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 SLC25A27O95847 323 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 DNAJB13P59910 316 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 EPS8Q12929 822 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 FAM110CQ1W6H9 321 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 RFTN2Q52LD8 501 aaPredicted RBP12.84□□□□□ -0.35
SNX1-201ENST00000261889 DET1Q7L5Y6 550 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 PIANPQ8IYJ0 282 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 RNF175Q8N4F7 328 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 NPLOC4Q8TAT6 608 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 NTAN1Q96AB6 310 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 NSMCE3Q96MG7 304 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 RIBC2Q9H4K1 309 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 NSMCE4AQ9NXX6 385 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 ERVK-18Q9QC07 812 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 SARDHQ9UL12 918 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 PCDHGC4Q9Y5F7 938 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 SPO11Q9Y5K1 396 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 A8MV72 311 aaPredicted RBP12.84□□□□□ -0.35
SNX1-201ENST00000261889 MTSS1O43312 755 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 INHBBP09529 407 aa12.84□□□□□ -0.35
SNX1-201ENST00000261889 THRBP10828 461 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms