RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 UTS2BQ765I0 119 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ERI1Q8IV48 349 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 IRGQQ8WZA9 623 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PBXIP1Q96AQ6 731 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ISG20Q96AZ6 181 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 TMEM248Q9NWD8 314 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 VNN3Q9NY84 501 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 SLC25A37Q9NYZ2 338 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 MARCH2Q9P0N8 246 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ACTR3BQ9P1U1 418 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 IFT80Q9P2H3 777 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 CIDEBQ9UHD4 219 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TLR6Q9Y2C9 796 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CAPN1P07384 714 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 RPS6KA2Q15349 733 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 MAP7D1Q3KQU3 841 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TXNDC11Q6PKC3 985 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 MINDY1Q8N5J2 469 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 WFDC5Q8TCV5 224 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CD200R1Q8TD46 325 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ACDQ96AP0 544 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 DUS3LQ96G46 650 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 LHPPQ9H008 270 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 AP5M1Q9H0R1 490 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 FANCEQ9HB96 536 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ZFYVE28Q9HCC9 887 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PLK2Q9NYY3 685 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PCDHGA11Q9Y5H2 935 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PRSS21Q9Y6M0 314 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 A0A1W2PP18 115 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 KANSL1LA0AUZ9 987 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 NRG2O14511 850 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 LBPP18428 481 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 RXRGP48443 463 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ZNF140P52738 457 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 RPL26P61254 145 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 STX1BP61266 288 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LSM3P62310 102 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 ATP1A4Q13733 1029 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LRRC73Q5JTD7 316 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 ATXN7L2Q5T6C5 722 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 PRSS55Q6UWB4 352 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 RFLNAQ6ZTI6 216 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LGI2Q8N0V4 545 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LPCAT1Q8NF37 534 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 TMBIM1Q969X1 311 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 KCTD14Q9BQ13 255 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 HGH1Q9BTY7 390 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CELSR3Q9NYQ7 3312 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 MICAL3Q7RTP6 2002 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 XPNPEP2O43895 674 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 SYNCRIPO60506 623 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 HSD17B1P14061 328 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 UGT1A4P22310 534 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 FASP25445 335 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 CCND3P30281 292 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 UGT1A3P35503 534 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 UGT1A5P35504 534 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LCP2Q13094 533 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 PHKG1Q16816 387 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 XKR7Q5GH72 579 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 RTP2Q5QGT7 225 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 VARS2Q5ST30 1063 aaKnown RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 USP50Q70EL3 339 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 SLC15A4Q8N697 577 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 FNDC8Q8TC99 324 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 BCL7CQ8WUZ0 217 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 SNX19Q92543 992 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 LINGO1Q96FE5 620 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 SUSD3Q96L08 255 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 DGCR6LQ9BY27 220 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 AIG1Q9NVV5 245 aa10.57□□□□□ -0.72
USP28-201ENST00000003302 POLR3HQ9Y535 204 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 ZFP37Q9Y6Q3 630 aaPredicted RBP10.57□□□□□ -0.72
USP28-201ENST00000003302 MUC3AQ02505 3323 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 OR7A17O14581 309 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 FGF4P08620 206 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 RPS17P08708 135 aaKnown RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 INHBBP09529 407 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 ELNP15502 786 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 CALRP27797 417 aaKnown RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 RPS9P46781 194 aaKnown RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 GPR141Q7Z602 305 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SPRED1Q7Z699 444 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 CATSPER1Q8NEC5 780 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SDCCAG3Q96C92 435 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 INIPQ9NRY2 104 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP28-201ENST00000003302 RASAL1O95294 804 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 PFKLP17858 780 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 PSMA4P25789 261 aaKnown RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 ACVR1Q04771 509 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 TGFBIQ15582 683 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 RBBP7Q16576 425 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 SMN1Q16637 294 aaKnown RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 ANKRD26P1Q6NSI1 321 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 MFSD2AQ8NA29 543 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 OR10A6Q8NH74 314 aa10.56□□□□□ -0.72
USP28-201ENST00000003302 CENPNQ96H22 339 aaPredicted RBP10.56□□□□□ -0.72
USP28-201ENST00000003302 EGLN2Q96KS0 407 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms