RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GTPBP10A4D1E9 387 aaKnown RBP14.26□□□□□ -0.13
CLN3-249ENST00000636685 MEN1O00255 615 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 CCP110O43303 1012 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 PRICKLE3O43900 615 aaPredicted RBP14.26□□□□□ -0.13
CLN3-249ENST00000636685 NUAK1O60285 661 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 ALPPP05187 535 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 KLK3P07288 261 aaPredicted RBP14.26□□□□□ -0.13
CLN3-249ENST00000636685 CAPN1P07384 714 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 MMP8P22894 467 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 HTR1EP28566 365 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 CLCNKAP51800 687 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 ZNF235Q14590 738 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 MYBPC3Q14896 1274 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 GPR19Q15760 415 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 PLA2G4EQ3MJ16 856 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 WDR59Q6PJI9 974 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 CDH24Q86UP0 819 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 PARP9Q8IXQ6 854 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 DSELQ8IZU8 1212 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 GALNT16Q8N428 558 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 AOPEPQ8N6M6 819 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 NPWQ8N729 165 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 PIH1D2Q8WWB5 315 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 UBXN4Q92575 508 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 NUDCD1Q96RS6 583 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 RMI1Q9H9A7 625 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 ARFGAP3Q9NP61 516 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 SLC23A2Q9UGH3 650 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 PPIL1Q9Y3C6 166 aa14.26□□□□□ -0.13
CLN3-249ENST00000636685 ZNF469Q96JG9 3925 aaPredicted RBP14.26□□□□□ -0.13
CLN3-249ENST00000636685 OR52A4PA6NMU1 304 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 PDZK1P1A8MUH7 402 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 FADS2P1A8MWK0 482 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 MASP2O00187 686 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 JCHAINP01591 159 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 HSP90AA1P07900 732 aaKnown RBP14.25□□□□□ -0.13
CLN3-249ENST00000636685 PDHA1P08559 390 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 KRT3P12035 628 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 OTX2P32243 289 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 ARL4DP49703 201 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 STC1P52823 247 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 GSDMDP57764 484 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 ZNF630Q2M218 657 aaPredicted RBP14.25□□□□□ -0.13
CLN3-249ENST00000636685 ZNF648Q5T619 568 aaPredicted RBP14.25□□□□□ -0.13
CLN3-249ENST00000636685 ARMC12Q5T9G4 340 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 DPY19L2P1Q6NXN4 242 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 FAM198BQ6UWH4 519 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 TTC30BQ8N4P2 665 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 SLC20A1Q8WUM9 679 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 WDR24Q96S15 920 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 MAP3K3Q99759 626 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 RAB33BQ9H082 229 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 SLC40A1Q9NP59 571 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 CHST11Q9NPF2 352 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 KCND1Q9NSA2 647 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 ATXN10Q9UBB4 475 aa14.25□□□□□ -0.13
CLN3-249ENST00000636685 EEF2KO00418 725 aaKnown RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 NADKO95544 446 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 BRAFP15056 766 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 ZNF8P17098 575 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 MAXP61244 160 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 TUBB4BP68371 445 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 TUBB2AQ13885 445 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 SPOCD1Q6ZMY3 1216 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 BNC2Q6ZN30 1099 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 RAB43Q86YS6 212 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 D2HGDHQ8N465 521 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 FAR1Q8WVX9 515 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 TM9SF4Q92544 642 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 RELTQ969Z4 430 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 ZNF501Q96CX3 271 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 PCMTD1Q96MG8 357 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 LRFN5Q96NI6 719 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 TRAPPC9Q96Q05 1148 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 TUBB2BQ9BVA1 445 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 CARD9Q9H257 536 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 FAM207AQ9NSI2 230 aaPredicted RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 POT1Q9NUX5 634 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 NOVA2Q9UNW9 492 aaKnown RBP14.24□□□□□ -0.13
CLN3-249ENST00000636685 DNAJC16Q9Y2G8 782 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 ZDHHC9Q9Y397 364 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 FHOD1Q9Y613 1164 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 ADGRG1Q9Y653 693 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 CACNA1CQ13936 2221 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 ANKRD12Q6UB98 2062 aa14.24□□□□□ -0.13
CLN3-249ENST00000636685 DDX3YO15523 660 aaKnown RBP14.23□□□□□ -0.13
CLN3-249ENST00000636685 CYP1A1P04798 512 aaPredicted RBP14.23□□□□□ -0.13
CLN3-249ENST00000636685 RPL10P27635 214 aaKnown RBP14.23□□□□□ -0.13
CLN3-249ENST00000636685 HTR7P34969 479 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 RORAP35398 523 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 PTP4A2Q12974 167 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 HIF1AQ16665 826 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 CA9Q16790 459 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 TDRD12Q587J7 1177 aaKnown RBP14.23□□□□□ -0.13
CLN3-249ENST00000636685 VWA2Q5GFL6 755 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 CRTC3Q6UUV7 619 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 MRGPREQ86SM8 312 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 CLEC1AQ8NC01 280 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 EPS8L1Q8TE68 723 aa14.23□□□□□ -0.13
CLN3-249ENST00000636685 WDR77Q9BQA1 342 aaPredicted RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms