RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF517Q6ZMY9 492 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 SPRED1Q7Z699 444 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 NLGN4XQ8N0W4 816 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 EMC1Q8N766 993 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PPM1NQ8N819 430 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 NAT8LQ8N9F0 302 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 OR52H1Q8NGJ2 320 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 CPT1BQ92523 772 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 AKAP1Q92667 903 aaKnown RBP eCLIP10.15□□□□□ -0.781e-6■□□□□ 10.4
VPS39-214ENST00000614932 NCLNQ969V3 563 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 FYTTD1Q96QD9 318 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 UPF3AQ9H1J1 476 aaKnown RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 SDHAF3Q9NRP4 125 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 PAK1IP1Q9NWT1 392 aaPredicted RBP10.15□□□□□ -0.78
VPS39-214ENST00000614932 ZNF224Q9NZL3 707 aa10.15□□□□□ -0.78
VPS39-214ENST00000614932 RGS5O15539 181 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 PIGNO95427 931 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 SLC25A27O95847 323 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 HOXC6P09630 235 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 ZNF30P17039 623 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 MAOBP27338 520 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 GARSP41250 739 aaKnown RBP10.15□□□□□ -0.79
VPS39-214ENST00000614932 KCNJ11Q14654 390 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 TTLL4Q14679 1199 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 PRAMEF19Q5SWL8 479 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 DENND1BQ6P3S1 775 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 C2orf69Q8N8R5 385 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 WDR48Q8TAF3 677 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 TTPALQ9BTX7 342 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 ASPSCR1Q9BZE9 553 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 ING2Q9H160 280 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 CDT1Q9H211 546 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 PNPLA8Q9NP80 782 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 SLC45A1Q9Y2W3 748 aa10.15□□□□□ -0.79
VPS39-214ENST00000614932 OTOFQ9HC10 1997 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 F8W036 122 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SGK1O00141 431 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CXCL11O14625 94 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 PSTPIP1O43586 416 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 PROSCO94903 275 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ECDO95905 644 aaPredicted RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 ALDH4A1P30038 563 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ELK3P41970 407 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 GP2P55259 537 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 LSM3P62310 102 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 ADARB1P78563 741 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 ZNF45Q02386 682 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 FPGSQ05932 587 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 MXD4Q14582 209 aaPredicted RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 MFSD10Q14728 455 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 STXBP5Q5T5C0 1151 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 MROH9Q5TGP6 573 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 RETSATQ6NUM9 610 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 MPZL3Q6UWV2 235 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CFAP77Q6ZQR2 320 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 RAB43Q86YS6 212 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 RHOT1Q8IXI2 618 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SYTL1Q8IYJ3 562 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 KATNAL2Q8IYT4 538 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ATAD1Q8NBU5 361 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 KCT2Q8NC54 265 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CANT1Q8WVQ1 401 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SLC7A6Q92536 515 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SLC9A6Q92581 669 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 FOXJ1Q92949 421 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SLC47A1Q96FL8 570 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 OR52B2Q96RD2 323 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 FAM49AQ9H0Q0 323 aaPredicted RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 SLC6A15Q9H2J7 730 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 PDZD7Q9H5P4 517 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 BTBD3Q9Y2F9 522 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CDY2AQ9Y6F7 541 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CDY1Q9Y6F8 540 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SCN4AP35499 1836 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 DNAJC25-GNG10A0A024R161 153 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 TRAV20A0A0B4J274 112 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 HEATR9A2RTY3 570 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 OR6C70A6NIJ9 312 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 LACTBL1A8MY62 500 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 KBTBD13C9JR72 458 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 AXIN1O15169 862 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SSX4O60224 188 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 LGALS2P05162 132 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 CRHBPP24387 322 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 HOXA1P49639 335 aaPredicted RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 EFNA5P52803 228 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 PSME3P61289 254 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 TNK1Q13470 666 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 BMPR2Q13873 1038 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 EFR3AQ14156 821 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ZNF124Q15973 351 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 VARS2Q5ST30 1063 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 JADE1Q6IE81 842 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ZPBP2Q6X784 338 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 ANKS3Q6ZW76 656 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 R3HCC1LQ7Z5L2 792 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 MRPL10Q7Z7H8 261 aaKnown RBP10.14□□□□□ -0.79
VPS39-214ENST00000614932 IGDCC3Q8IVU1 814 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 WDTC1Q8N5D0 677 aa10.14□□□□□ -0.79
VPS39-214ENST00000614932 SMG8Q8ND04 991 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms