RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CABS1Q96KC9 395 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 LMLNQ96KR4 655 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 TSNARE1Q96NA8 513 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 SRPK1Q96SB4 655 aaKnown RBP10.12□□□□□ -0.79
SS18-210ENST00000578700 ERVMER34-1Q9H9K5 563 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 VPS51Q9UID3 782 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 FZD4Q9ULV1 537 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 PTPN13Q12923 2485 aa10.12□□□□□ -0.79
SS18-210ENST00000578700 TDRD6O60522 2096 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 ZCWPW2A0A1B0GU75 182 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 A0A1W2PPM1 405 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 C2orf81A6NN90 581 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 CXorf49A8MYA2 514 aaPredicted RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 PFDN6O15212 129 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 BNIP3LO60238 219 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 SNAP91O60641 907 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 MAGEC1O60732 1142 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 ZMPSTE24O75844 475 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 VAPBO95292 243 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 IGSF6O95976 241 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 SRPRAP08240 638 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 VIMP08670 466 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 PYGBP11216 843 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 NMBRP28336 390 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 CHRNA4P43681 627 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 SERPINB8P50452 374 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 EPHB1P54762 984 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 PRAMEP78395 509 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 ARF5P84085 180 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 RAD51Q06609 339 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 PROX2Q3B8N5 592 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 ACCSLQ4AC99 568 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 MROH9Q5TGP6 573 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 LINGO4Q6UY18 593 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 TIFABQ6ZNK6 161 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 KIAA0408Q6ZU52 694 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 KANSL1Q7Z3B3 1105 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 SRLQ86TD4 932 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 NDUFAF2Q8N183 169 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 RYBPQ8N488 228 aaPredicted RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 BRSK1Q8TDC3 778 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 BLOC1S5Q8TDH9 187 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 PDCD6IPQ8WUM4 868 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 KCNE4Q8WWG9 221 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 MFSD3Q96ES6 412 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 KLHDC7BQ96G42 594 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 TRIM56Q9BRZ2 755 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 ABCG4Q9H172 646 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 CLMPQ9H6B4 373 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 CAAP1Q9H8G2 361 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 PLAC1Q9HBJ0 212 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 NOD2Q9HC29 1040 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 SMYD2Q9NRG4 433 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 IARS2Q9NSE4 1012 aaKnown RBP10.11□□□□□ -0.79
SS18-210ENST00000578700 UCKL1Q9NWZ5 548 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.11□□□□□ -0.79
SS18-210ENST00000578700 HACD3Q9P035 362 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 OR51B4Q9Y5P0 310 aa10.11□□□□□ -0.79
SS18-210ENST00000578700 TTC24A2A3L6 582 aaPredicted RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 CCDC78A2IDD5 438 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 FOXO6A8MYZ6 492 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 B8ZZF3 427 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 GOLGA8RI6L899 631 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 MUSKO15146 869 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC31A1O15431 190 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC7A4O43246 635 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC28A2O43868 658 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 TYROBPO43914 113 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 FAM155BO75949 473 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 FAM107AO95990 144 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 C1QAP02745 245 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 ITGA2BP08514 1039 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 DGKAP23743 735 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 TYK2P29597 1187 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 RPA3P35244 121 aaPredicted RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 RECQLP46063 649 aaPredicted RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 CSNK1DP48730 415 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 POLD2P49005 469 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 LIMK2P53671 638 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC12A2P55011 1212 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 RPL26P61254 145 aaKnown RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 SNRPD1P62314 119 aaKnown RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC18A2Q05940 514 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 BCL2L1Q07817 233 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 BMPR2Q13873 1038 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 GALNT3Q14435 633 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 LRRC14Q15048 493 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 CNGA3Q16281 694 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 TSTD2Q5T7W7 516 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 TEDDM1Q5T9Z0 273 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 NEPROQ6NW34 567 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 FOXR1Q6PIV2 292 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SDCCAG8Q86SQ7 713 aaPredicted RBP10.1□□□□□ -0.79
SS18-210ENST00000578700 TRIM42Q8IWZ5 723 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 UNC5BQ8IZJ1 945 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 CACTIN-AS1Q8N1I8 211 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 SLC25A45Q8N413 288 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 BANPQ8N9N5 519 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 LPCAT1Q8NF37 534 aa10.1□□□□□ -0.79
SS18-210ENST00000578700 OR6P1Q8NGX9 317 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms