RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 TNFAIP1Q13829 316 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SCARB2Q14108 478 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 E2F5Q15329 346 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 EFNB3Q15768 340 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CTF1Q16619 201 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 IZUMO4Q1ZYL8 232 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 C2orf68Q2NKX9 166 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ALG11Q2TAA5 492 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ATP13A5Q4VNC0 1218 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 PARP10Q53GL7 1025 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 C1orf141Q5JVX7 400 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 GKAP1Q5VSY0 366 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 GGNBP1Q5YKI7 109 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ZNF324BQ6AW86 544 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 TTC19Q6DKK2 380 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 CAPRIN2Q6IMN6 1127 aaKnown RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 SLC36A4Q6YBV0 504 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TAOK1Q7L7X3 1001 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 GALNTL5Q7Z4T8 443 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SLFN11Q7Z7L1 901 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 HAPLN4Q86UW8 402 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 GALNT13Q8IUC8 556 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 LRRC49Q8IUZ0 686 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 WDR63Q8IWG1 891 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 PGBD5Q8N414 524 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TTC30BQ8N4P2 665 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SYT2Q8N9I0 419 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 AVL9Q8NBF6 648 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CLEC18CQ8NCF0 446 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 FAM76AQ8TAV0 307 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 MIPOL1Q8TD10 442 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 ANKRD7Q92527 254 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SLC22A18Q96BI1 424 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 MMABQ96EY8 250 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 SAT2Q96F10 170 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 VMP1Q96GC9 406 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SLC41A2Q96JW4 573 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TMEM68Q96MH6 324 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SH3GL2Q99962 352 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SLCO5A1Q9H2Y9 848 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 HINT3Q9NQE9 182 aaKnown RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.23□□□□□ -1.89
USP28-210ENST00000542033 MRGBPQ9NV56 204 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 EXOC1Q9NV70 894 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 COMMD8Q9NX08 183 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 SLC9A2Q9UBY0 812 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CLIP2Q9UDT6 1046 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 TTC7AQ9ULT0 858 aaPredicted RBP3.23□□□□□ -1.89
USP28-210ENST00000542033 PCDHGB1Q9Y5G3 927 aa3.23□□□□□ -1.89
USP28-210ENST00000542033 CGNL1Q0VF96 1302 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 ZNF644Q9H582 1327 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 PEG3Q9GZU2 1588 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 KIAA1107Q9UPP5 1409 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 LOC100509620A0A075B734 347 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 FAM237AA0A1B0GTK4 181 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 CPED1A4D0V7 1026 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 A8MXE2 369 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 BTBD18B2RXH4 712 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SOCS6O14544 535 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 CTDSP2O14595 271 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 HCRTR2O43614 444 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 HS6ST1O60243 411 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 NDUFS7O75251 213 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 MTRF1O75570 445 aaKnown RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 SLC25A12O75746 678 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 BBOX1O75936 387 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 NKX2-2O95096 273 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SMC2O95347 1197 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 ZBTB11O95625 1053 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 IGHDP01880 384 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 AFPP02771 609 aaKnown RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 SELLP14151 372 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 IL7RP16871 459 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 ZNF182P17025 639 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 GABRB1P18505 474 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 NF2P35240 595 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 MSH2P43246 934 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 MAGEA9P43362 315 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SLC15A1P46059 708 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 CLK1P49759 484 aaKnown RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 PDLIM4P50479 330 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SH3BGRP55822 239 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 KRTAP10-9P60411 292 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 PSMC6P62333 389 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 UBXN2AP68543 259 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 TFAP4Q01664 338 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 PCLAFQ15004 111 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SF3B4Q15427 424 aaKnown RBP eCLIP3.22□□□□□ -1.89
USP28-210ENST00000542033 KRT24Q2M2I5 525 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 C15orf59Q2T9L4 293 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 KIF19Q2TAC6 998 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 ASTE1Q2TB18 679 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 EIF2S3LQ2VIR3 472 aaKnown RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 TTC31Q49AM3 519 aaPredicted RBP3.22□□□□□ -1.89
USP28-210ENST00000542033 ERMARDQ5T6L9 678 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 FAM69BQ5VUD6 431 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 SIGIRRQ6IA17 410 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 ANKRD54Q6NXT1 300 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 FAM122CQ6P4D5 195 aa3.22□□□□□ -1.89
USP28-210ENST00000542033 KCTD18Q6PI47 426 aaPredicted RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms