RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PGAM1P18669 254 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 ACRV1P26436 265 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 EPHA8P29322 1005 aaPredicted RBP12.84□□□□□ -0.35
CCDC42-202ENST00000539522 HK3P52790 923 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 THOP1P52888 689 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 GPX6P59796 221 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 TCEA2Q15560 299 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 PYCR3Q53H96 274 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 DNAJC21Q5F1R6 531 aaKnown RBP12.84□□□□□ -0.35
CCDC42-202ENST00000539522 ARMC3Q5W041 872 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 MARK2Q7KZI7 788 aaKnown RBP12.84□□□□□ -0.35
CCDC42-202ENST00000539522 SERPINA9Q86WD7 417 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 GATAD2AQ86YP4 633 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 PHACTR4Q8IZ21 702 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 FBXO36Q8NEA4 188 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 OR4L1Q8NH43 312 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 PKNOX2Q96KN3 472 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 TTC25Q96NG3 672 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 EDEM2Q9BV94 578 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 ZDHHC5Q9C0B5 715 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 TMEM168Q9H0V1 697 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 OR2AG1Q9H205 316 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 TRIM39Q9HCM9 518 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 CYP4F12Q9HCS2 524 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 SAYSD1Q9NPB0 183 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 SMYD2Q9NRG4 433 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 DNAJC28Q9NX36 388 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 VPS18Q9P253 973 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 KLQ9UEF7 1012 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 BTBD3Q9Y2F9 522 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 MAD1L1Q9Y6D9 718 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 FAM169AQ9Y6X4 670 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 PIKFYVEQ9Y2I7 2098 aa12.84□□□□□ -0.35
CCDC42-202ENST00000539522 MAGEB16A2A368 324 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 TM4SF5O14894 197 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 EML2O95834 649 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 PYGLP06737 847 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 DGKAP23743 735 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 GABRB3P28472 473 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 CACNG1Q06432 222 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 TMEM115Q12893 351 aaPredicted RBP12.83□□□□□ -0.36
CCDC42-202ENST00000539522 GPS2Q13227 327 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 C1orf61Q13536 156 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 ITGA9Q13797 1035 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 PTK2BQ14289 1009 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 GPR33Q49SQ1 333 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 ZRANB3Q5FWF4 1079 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 CASC4Q6P4E1 433 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 AFTPHQ6ULP2 937 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 LRIG3Q6UXM1 1119 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 PHYKPLQ8IUZ5 450 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 HID1Q8IV36 788 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 DENND6AQ8IWF6 608 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 KIAA2013Q8IYS2 634 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 BEND7Q8N7W2 519 aaPredicted RBP12.83□□□□□ -0.36
CCDC42-202ENST00000539522 ZNF548Q8NEK5 533 aaPredicted RBP12.83□□□□□ -0.36
CCDC42-202ENST00000539522 PYROXD1Q8WU10 500 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 LRRC39Q96DD0 335 aa12.83□□□□□ -0.36
CCDC42-202ENST00000539522 COL5A1P20908 1838 aaPredicted RBP12.83□□□□□ -0.36
CCDC42-202ENST00000539522 COL27A1Q8IZC6 1860 aaPredicted RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 LY6G6EA0A0G2JKS1 128 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 C4orf47A7E2U8 309 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CD3EAPO15446 510 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 RIPK2O43353 540 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 PIAS1O75925 651 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SASH3O75995 380 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SYPP08247 313 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ERVK-10P10266 1014 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 JUNDP17535 347 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ITGALP20701 1170 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 AK4P27144 223 aaPredicted RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SSTR1P30872 391 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 GNPDA1P46926 289 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 EIF3BP55884 814 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 PPARDQ03181 441 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 LAMB3Q13751 1172 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SLC29A2Q14542 456 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 UAP1Q16222 522 aaPredicted RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 KYNUQ16719 465 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 TYSND1Q2T9J0 566 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 RD3Q7Z3Z2 195 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CROCCP2Q86T23 111 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ALYREFQ86V81 257 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 PALM2Q8IXS6 379 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ZBED8Q8IZ13 594 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CLDN19Q8N6F1 224 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 GPR150Q8NGU9 434 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 OR6P1Q8NGX9 317 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 LKAAEAR1Q8TD35 194 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 GPBAR1Q8TDU6 330 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 SGF29Q96ES7 293 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CFAP36Q96G28 342 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 C9orf72Q96LT7 481 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CCDC77Q9BR77 488 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 P2RY12Q9H244 342 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CDC42EP4Q9H3Q1 356 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 CARS2Q9HA77 564 aaKnown RBP12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ZDHHC3Q9NYG2 299 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 MOCS1Q9NZB8 636 aa12.82□□□□□ -0.36
CCDC42-202ENST00000539522 ZC3H7BQ9UGR2 993 aaKnown RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms