RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 NFKBIAP25963 317 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 KRT81Q14533 505 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 NR1I3Q14994 352 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 SEPT7Q16181 437 aaKnown RBP14.04□□□□□ -0.16
CPSF1-201ENST00000526271 IFI16Q16666 785 aaKnown RBP14.04□□□□□ -0.16
CPSF1-201ENST00000526271 CPZQ66K79 652 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 ABRAXAS1Q6UWZ7 409 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 C6orf15Q6UXA7 325 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-201ENST00000526271 B4GALNT4Q76KP1 1039 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 PRSS42Q7Z5A4 293 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 LRRC49Q8IUZ0 686 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 PLD5Q8N7P1 536 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 GPR150Q8NGU9 434 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 CT55Q8WUE5 264 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 NSMCE1Q8WV22 266 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 RAPGEF5Q92565 580 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 SH3KBP1Q96B97 665 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 HDAC11Q96DB2 347 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 TRIT1Q9H3H1 467 aaKnown RBP14.04□□□□□ -0.16
CPSF1-201ENST00000526271 TRIM39Q9HCM9 518 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 SLC40A1Q9NP59 571 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 SEMA5BQ9P283 1151 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 NFKBIL1Q9UBC1 381 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-201ENST00000526271 SHOC2Q9UQ13 582 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 DNAJC16Q9Y2G8 782 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 KCTD3Q9Y597 815 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 PCDHGA6Q9Y5G7 932 aa14.04□□□□□ -0.16
CPSF1-201ENST00000526271 CCDC88CQ9P219 2028 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 IGHV5-51A0A0C4DH38 117 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 NDUFA10O95299 355 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 FOLR1P15328 257 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 ZNF7P17097 686 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 BPIP17213 487 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 RPL10P27635 214 aaKnown RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 GJC1P36383 396 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 CAPZBP47756 277 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 PPM1FP49593 454 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 PMS2P54278 862 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 RPS18P62269 152 aaKnown RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 IL10RAQ13651 578 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 GPR18Q14330 331 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 KCNAB1Q14722 419 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 NOMO1Q15155 1222 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 TDRD12Q587J7 1177 aaKnown RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 CAPRIN2Q6IMN6 1127 aaKnown RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 PLXDC1Q8IUK5 500 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 GLYATL1Q969I3 302 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 EFHD1Q9BUP0 239 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 MLPHQ9BV36 600 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-201ENST00000526271 PACSIN1Q9BY11 444 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 EPB41L1Q9H4G0 881 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 PKD2L2Q9NZM6 624 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 IP6K2Q9UHH9 426 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 AMACRQ9UHK6 382 aa14.03□□□□□ -0.16
CPSF1-201ENST00000526271 CDC14CA4D256 554 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 RGSL1A5PLK6 1076 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 C3orf70A6NLC5 250 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 OR5K4A6NMS3 321 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 CREG1O75629 220 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 GNLYP22749 145 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 CES1P23141 567 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 DRG2P55039 364 aaKnown RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 DCDC1P59894 354 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 IFI35P80217 286 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 FANCCQ00597 558 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 MC1RQ01726 317 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 PPIDQ08752 370 aaKnown RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 CHAF1BQ13112 559 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 DNASE1L3Q13609 305 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 PRR30Q53SZ7 412 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 FAM69BQ5VUD6 431 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 LCN10Q6JVE6 187 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 PWWP2BQ6NUJ5 590 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 FAM199XQ6PEV8 388 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 FAM83HQ6ZRV2 1179 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 FAM92BQ6ZTR7 304 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 ASB18Q6ZVZ8 466 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 CCDC13Q8IYE1 715 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 NDUFAF2Q8N183 169 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 TRIM11Q96F44 468 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 PPM1MQ96MI6 270 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 ZNF670Q9BS34 389 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 SPATA16Q9BXB7 569 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.02□□□□□ -0.17
CPSF1-201ENST00000526271 OSGEPL1Q9H4B0 414 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 MLXIPLQ9NP71 852 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 LHX9Q9NQ69 397 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 ZNF711Q9Y462 761 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 CREBBPQ92793 2442 aa14.02□□□□□ -0.17
CPSF1-201ENST00000526271 SEMA7AO75326 666 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 KATNA1O75449 491 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 SLC25A14O95258 325 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-201ENST00000526271 NELFEP18615 380 aaKnown RBP14.01□□□□□ -0.17
CPSF1-201ENST00000526271 CTSCP53634 463 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 SEMA5AQ13591 1074 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 NADK2Q4G0N4 442 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 FIGNQ5HY92 759 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 TIGD7Q6NT04 549 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-201ENST00000526271 NPNTQ6UXI9 565 aa14.01□□□□□ -0.17
CPSF1-201ENST00000526271 PHYKPLQ8IUZ5 450 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms