RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ALG11Q2TAA5 492 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 ZNF585BQ52M93 769 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 XKR9Q5GH70 373 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 HYIQ5T013 277 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 SNX30Q5VWJ9 437 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 KLHL35Q6PF15 583 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 NCEH1Q6PIU2 408 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 KRBA2Q6ZNG9 492 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 TAOK1Q7L7X3 1001 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 WDR63Q8IWG1 891 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 ADHFE1Q8IWW8 467 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 SPATA6LQ8N4H0 392 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 RBMXL3Q8N7X1 1067 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 SMRP1Q8NCR6 262 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 C1orf131Q8NDD1 294 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 OR14L1PQ8NHC6 308 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CREB3L4Q8TEY5 395 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 SCFD2Q8WU76 684 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 FAM216AQ8WUB2 273 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 USP6NLQ92738 828 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 MIB2Q96AX9 1013 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CMTM3Q96MX0 182 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 WDFY2Q96P53 400 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CTAGE1Q96RT6 745 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CHCHD6Q9BRQ6 235 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 PCGF1Q9BSM1 259 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 POLR1BQ9H9Y6 1135 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 RANGRFQ9HD47 186 aaPredicted RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 DDX4Q9NQI0 724 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 HAUS2Q9NVX0 235 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 HCFC1R1Q9NWW0 138 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 OCIAD1Q9NX40 245 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 AGO1Q9UL18 857 aaKnown RBP3.89□□□□□ -1.79
CD44-219ENST00000525685 STON1Q9Y6Q2 735 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 PXDNLA1KZ92 1463 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 ANKRD31Q8N7Z5 1873 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 DLEC1Q9Y238 1755 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 CARMIL3Q8ND23 1372 aa3.89□□□□□ -1.79
CD44-219ENST00000525685 NUP98P52948 1817 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ATP10DQ9P241 1426 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 BRCA1P38398 1863 aaKnown RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 ANKRD18BA2A2Z9 1011 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 LIPT2A6NK58 231 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 H3BQ06 376 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 J3KR12 359 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 VCYO14598 125 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 PAGE4O60829 102 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 GPC4O75487 556 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SOX30O94993 753 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 CYC1P08574 325 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 CLTBP09497 229 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 LAMP2P13473 410 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 DDX5P17844 614 aaKnown RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 HNRNPH1P31943 449 aaKnown RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 RXRGP48443 463 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 GALCP54803 685 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ZXDBP98169 803 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 TFAP4Q01664 338 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 EGR4Q05215 589 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 NIPAL4Q0D2K0 466 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 LRMPQ12912 555 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SIM2Q14190 667 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 SLC39A14Q15043 492 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 TWISTNBQ3B726 338 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 WDR73Q6P4I2 378 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 KCTD18Q6PI47 426 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 KIF6Q6ZMV9 814 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 QSOX2Q6ZRP7 698 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 CCDC129Q6ZRS4 1044 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 MTSS1LQ765P7 747 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ARHGAP12Q8IWW6 846 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 TMTC2Q8N394 836 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ELP5Q8TE02 316 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 MOAP1Q96BY2 351 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ARHGEF26Q96DR7 871 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 PERPQ96FX8 193 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 MED30Q96HR3 178 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SLC41A2Q96JW4 573 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 FAM110AQ9BQ89 295 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 STRA6Q9BX79 667 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 ITPAQ9BY32 194 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 TM6SF1Q9BZW5 370 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SYNCQ9H7C4 482 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 PPP1R3EQ9H7J1 279 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 TBC1D22BQ9NU19 505 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 BLOC1S4Q9NUP1 217 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SLC9A2Q9UBY0 812 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 SLC45A1Q9Y2W3 748 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 LAMB2P55268 1798 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 N4BP2Q86UW6 1770 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 MAP3K15Q6ZN16 1313 aa3.88□□□□□ -1.79
CD44-219ENST00000525685 IBTKQ9P2D0 1353 aaPredicted RBP3.88□□□□□ -1.79
CD44-219ENST00000525685 NOTCH4Q99466 2003 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 TAF4O00268 1085 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 TCERG1O14776 1098 aaKnown RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 PAPSS2O95340 614 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 PLA2G2AP14555 144 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 RRM1P23921 792 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 TM4SF1P30408 202 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SSTR2P30874 369 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms