RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 IL1RL2Q9HB29 575 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SAR1AQ9NR31 198 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 IARS2Q9NSE4 1012 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 COQ3Q9NZJ6 369 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 THEGQ9P2T0 379 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 DOCK4Q8N1I0 1966 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 VPS13AQ96RL7 3174 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 WDFY4Q6ZS81 3184 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 STX16-NPEPL1H3BU86 382 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 AURKAO14965 403 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 VILLO15195 856 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 LEFTY1O75610 366 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 AP2A1O95782 977 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 NMBRP28336 390 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MAT2AP31153 395 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TPTEP56180 551 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 RELAQ04206 551 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CDH17Q12864 832 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SMAD4Q13485 552 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 KCNJ11Q14654 390 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 DNAL1Q4LDG9 190 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ZRANB3Q5FWF4 1079 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SIRPB2Q5JXA9 342 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SDE2Q6IQ49 451 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ESRP1Q6NXG1 681 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ADIPOR2Q86V24 386 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CAND1Q86VP6 1230 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF276Q8N554 614 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 PPHLN1Q8NEY8 458 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 OR2AP1Q8NGE2 309 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 OR13C4Q8NGS5 318 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 FNDC8Q8TC99 324 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SREK1Q8WXA9 508 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ACDQ96AP0 544 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MRGPRX2Q96LB1 330 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TTC25Q96NG3 672 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TSGA13Q96PP4 275 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 EBF1Q9UH73 591 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CDC14AQ9UNH5 594 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MUC3AQ02505 3323 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 COL4A4P53420 1690 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF487B1APH4 448 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CHADO15335 359 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A9O60656 530 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SIN3BO75182 1162 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 KLF8O95600 359 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SERPINA4P29622 427 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 GEMIN4P57678 1058 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ACTR3P61158 418 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 NRG1Q02297 640 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 DNASE1L3Q13609 305 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 HTR4Q13639 388 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 DEFB119Q8N690 84 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 HMGB4Q8WW32 186 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 OTUB2Q96DC9 234 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MYO19Q96H55 970 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CDRT15Q96T59 188 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MFSD1Q9H3U5 465 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ATP13A3Q9H7F0 1226 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 SIAEQ9HAT2 523 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A7Q9HAW7 530 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A10Q9HAW8 530 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A8Q9HAW9 530 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 GIMAP4Q9NUV9 329 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 GPC6Q9Y625 555 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CUL9Q8IWT3 2517 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 WASH4PA8MWX3 477 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TAF4O00268 1085 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 STX7O15400 261 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TM7SF2O76062 418 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 MFN2O95140 757 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TNFAIP8O95379 198 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CRTAMO95727 393 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 EGFP01133 1207 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 PRSS56P0CW18 603 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ITGB6P18564 788 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CTHP32929 405 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 IL12RB1P42701 662 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CAV1Q03135 178 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 CTBP1Q13363 440 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 PDAP1Q13442 181 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ART3Q13508 389 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 IHHQ14623 411 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 GPR141Q7Z602 305 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 IFNEQ86WN2 208 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 PSKH2Q96QS6 385 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 FOXQ1Q9C009 403 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 VPS11Q9H270 941 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 TOR3AQ9H497 397 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ATAD3AQ9NVI7 634 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 ZMYM5Q9UJ78 669 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 PCDHGA3Q9Y5H0 932 aa8.61□□□□□ -1.03
LIMCH1-209ENST00000509277 A0A1W2PPC1 479 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 CACNG3O60359 315 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 RNASEH2AO75792 299 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 LATS1O95835 1130 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A6P19224 532 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A1P22309 533 aa8.6□□□□□ -1.03
LIMCH1-209ENST00000509277 UGT1A4P22310 534 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms