RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PIANPQ8IYJ0 282 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CMTR2Q8IYT2 770 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 RNF148Q8N7C7 305 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PNPLA1Q8N8W4 532 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SIDT2Q8NBJ9 832 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 GRIN3AQ8TCU5 1115 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SH3RF2Q8TEC5 729 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 MRPS31Q92665 395 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 BADQ92934 168 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ZUFSPQ96AP4 578 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ZFRQ96KR1 1074 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 C3orf30Q96M34 536 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 NSMCE3Q96MG7 304 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 GPATCH1Q9BRR8 931 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 P2RY12Q9H244 342 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SEMA4BQ9NPR2 832 aaPredicted RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 ZIM2Q9NZV7 527 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 NDUFA13Q9P0J0 144 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SUN2Q9UH99 717 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PACSIN3Q9UKS6 424 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 DHRS7Q9Y394 339 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PCDHB9Q9Y5E1 797 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 OR51B4Q9Y5P0 310 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SCN8AQ9UQD0 1980 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ABHD14A-ACY1A0A1B0GW23 586 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CAPN8A6NHC0 703 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 EIF4E1BA6NMX2 242 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 IFRD1O00458 451 aaPredicted RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 RAD51BO15315 384 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 RNASEH1O60930 286 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 CYBBP04839 570 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PRSS56P0CW18 603 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 HSD17B1P14061 328 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PAX7P23759 505 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 MZF1P28698 734 aaPredicted RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 SLC7A2P52569 658 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ERVK-8P63133 956 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PCBP2Q15366 365 aaKnown RBP eCLIP11.86□□□□□ -0.512e-6■■■■■ 27.6
NUP54-202ENST00000502850 GPR33Q49SQ1 333 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 MPPE1Q53F39 396 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PTRHD1Q6GMV3 140 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 LINGO4Q6UY18 593 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.86□□□□□ -0.514e-6■□□□□ 8.6
NUP54-202ENST00000502850 SNX20Q7Z614 316 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 FUNDC1Q8IVP5 155 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CPNE9Q8IYJ1 553 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 MYO1HQ8N1T3 1032 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PAF1Q8N7H5 531 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 OR2T34Q8NGX1 318 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 OR2T3Q8NH03 318 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 KLHL32Q96NJ5 620 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 NSUN5Q96P11 429 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 GCNAQ96QF7 691 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 TUBGCP5Q96RT8 1024 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 UHRF1Q96T88 793 aaPredicted RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 TSC22D3Q99576 134 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 BRINP2Q9C0B6 783 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ATP13A3Q9H7F0 1226 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 C8orf4Q9NR00 106 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 MRPL17Q9NRX2 175 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 AIG1Q9NVV5 245 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SMPD4Q9NXE4 827 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PLK2Q9NYY3 685 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 KIAA1522Q9P206 1035 aaPredicted RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 DENND4CQ5VZ89 1909 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 A0A1W2PP18 115 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 PRORSD1PA6NEY8 169 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 KIAA0355O15063 1070 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 MT-CO1P00395 513 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 HDCP19113 662 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 TCN1P20061 433 aaPredicted RBP11.85□□□□□ -0.51
NUP54-202ENST00000502850 MSH3P20585 1137 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 DGKAP23743 735 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 CLCN7P51798 805 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 RCAN2Q14206 197 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 TGFBIQ15582 683 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 TTLL9Q3SXZ7 439 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 BLOC1S3Q6QNY0 202 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 GALNT13Q8IUC8 556 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 DEFB123Q8N688 67 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 PDPRQ8NCN5 879 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 OR9I1Q8NGQ6 314 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 EEF1AKMT1Q8WVE0 214 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 EME1Q96AY2 570 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 PKP2Q99959 881 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 ZBED2Q9BTP6 218 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 ZFYVE1Q9HBF4 777 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 FBRSL1Q9HCM7 1045 aaKnown RBP11.85□□□□□ -0.51
NUP54-202ENST00000502850 TMEM39AQ9NV64 488 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 LEF1Q9UJU2 399 aaPredicted RBP11.85□□□□□ -0.51
NUP54-202ENST00000502850 FCF1Q9Y324 198 aaKnown RBP11.85□□□□□ -0.51
NUP54-202ENST00000502850 SH3BP1Q9Y3L3 701 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 GPR45Q9Y5Y3 372 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 CPQQ9Y646 472 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 BPTFQ12830 3046 aa11.85□□□□□ -0.51
NUP54-202ENST00000502850 KANSL1LA0AUZ9 987 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 E2F3O00716 465 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 HTRA2O43464 458 aaPredicted RBP11.84□□□□□ -0.51
NUP54-202ENST00000502850 AHCYL1O43865 530 aa11.84□□□□□ -0.51
NUP54-202ENST00000502850 DNAJA2O60884 412 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms