RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 DCDC2BA2VCK2 349 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CTAGE15A4D2H0 777 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TCEA3O75764 348 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 FTH1P19P0C7X4 201 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CTAGE8P0CG41 777 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 PGAM1P18669 254 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CTBSQ01459 385 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 SPANXN3Q5MJ09 141 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CERCAMQ5T4B2 595 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CTAGE6Q86UF2 777 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 AMZ2Q86W34 360 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TMPRSS12Q86WS5 348 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CTAGE4Q8IX94 777 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 GPR156Q8NFN8 814 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 ZDHHC1Q8WTX9 485 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 STAMBPL1Q96FJ0 436 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TMEM98Q9Y2Y6 226 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 PCDHB1Q9Y5F3 818 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 EME2A4GXA9 379 aaPredicted RBP10.56□□□□□ -0.72
UBR4-208ENST00000459947 MGAT4DA6NG13 374 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TRIM38O00635 465 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 USP1O94782 785 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 POLBP06746 335 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 GSTA2P09210 222 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 ZNF8P17098 575 aaPredicted RBP10.56□□□□□ -0.72
UBR4-208ENST00000459947 MGAT1P26572 445 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 FOXN2P32314 431 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 DRG2P55039 364 aaKnown RBP10.56□□□□□ -0.72
UBR4-208ENST00000459947 PTPRRQ15256 657 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 ZNF542PQ5EBM4 170 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 SERPINA9Q86WD7 417 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 GPR150Q8NGU9 434 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 OR6P1Q8NGX9 317 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 SERPINB12Q96P63 405 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 PANX3Q96QZ0 392 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 CLPBQ9H078 707 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TMEM168Q9H0V1 697 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 TREX1Q9NSU2 369 aa10.56□□□□□ -0.72
UBR4-208ENST00000459947 NUDT21O43809 227 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 ATP1B2P14415 290 aaPredicted RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 GLB1P16278 677 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 RPS3P23396 243 aaKnown RBP eCLIP10.55□□□□□ -0.72
UBR4-208ENST00000459947 MAGEA3P43357 314 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 PRLHRP49683 370 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 EPHA4P54764 986 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 THOC5Q13769 683 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 DEFB133Q30KQ1 61 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 GLIPR1L2Q4G1C9 344 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 PRAMEF14Q5SWL7 426 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 CASC4Q6P4E1 433 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 DEPDC7Q96QD5 511 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 ERP44Q9BS26 406 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 UCKL1Q9NWZ5 548 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 NSMCE4AQ9NXX6 385 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 SMARCAL1Q9NZC9 954 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 BTBD3Q9Y2F9 522 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 NEUROG3Q9Y4Z2 214 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 OAS3Q9Y6K5 1087 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 DOCK9Q9BZ29 2069 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 GAPDHSO14556 408 aaPredicted RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 LIN7AO14910 233 aaPredicted RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 C8orf74Q6P047 294 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 EFL1Q7Z2Z2 1120 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 C17orf82Q86X59 251 aaPredicted RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 MMGT1Q8N4V1 131 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 CARD6Q9BX69 1037 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 SARS2Q9NP81 518 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 INTS10Q9NVR2 710 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 KLF15Q9UIH9 416 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 CCDC162PA2VCL2 907 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 RHPN2P1A8MT19 583 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 ADRB1P08588 477 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 F3P13726 295 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 PMLP29590 882 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 MLLT3P42568 568 aaPredicted RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 MAPK9P45984 424 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 C1orf61Q13536 156 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 NR1D2Q14995 579 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 TMEM220Q6QAJ8 160 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 MARK2Q7KZI7 788 aaKnown RBP10.55□□□□□ -0.72
UBR4-208ENST00000459947 HDAC10Q969S8 669 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 DPEP2Q9H4A9 486 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 FAM114A2Q9NRY5 505 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 POT1Q9NUX5 634 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 SYBUQ9NX95 663 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 GNPTGQ9UJJ9 305 aa10.55□□□□□ -0.72
UBR4-208ENST00000459947 SEC31AO94979 1220 aaKnown RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 GIMD1P0DJR0 217 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 FASLGP48023 281 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TMPRSS15P98073 1019 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 HIF1AQ16665 826 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 HIBCHQ6NVY1 386 aaPredicted RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 CENPUQ71F23 418 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 RAB44Q7Z6P3 723 aaPredicted RBP10.54□□□□□ -0.72
UBR4-208ENST00000459947 TRIM74Q86UV6 250 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TRIM48Q8IWZ4 208 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 PELI3Q8N2H9 469 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 OTUD6BQ8N6M0 293 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 OR2L2Q8NH16 312 aa10.54□□□□□ -0.72
UBR4-208ENST00000459947 TCEAL2Q9H3H9 227 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms