RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SDC3O75056 442 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 USP1O94782 785 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 GPR89BP0CG08 455 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ITGALP20701 1170 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ACRV1P26436 265 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ECHS1P30084 290 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 CTSCP53634 463 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ATXN3P54252 364 aaPredicted RBP12.27□□□□□ -0.45
USP40-205ENST00000430158 TMEM115Q12893 351 aaPredicted RBP12.27□□□□□ -0.45
USP40-205ENST00000430158 C1orf61Q13536 156 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 DBN1Q16643 649 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ZNF658BQ4V348 819 aaPredicted RBP12.27□□□□□ -0.45
USP40-205ENST00000430158 LDLRAP1Q5SW96 308 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 STEAP4Q687X5 459 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 DOK6Q6PKX4 331 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 AFTPHQ6ULP2 937 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 SERPINA9Q86WD7 417 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 GPR150Q8NGU9 434 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 OR4L1Q8NH43 312 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 ULK4Q96C45 1275 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 STAMBPL1Q96FJ0 436 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 RMI1Q9H9A7 625 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 CARS2Q9HA77 564 aaKnown RBP12.27□□□□□ -0.45
USP40-205ENST00000430158 SPASTQ9UBP0 616 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 GULP1Q9UBP9 304 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 SLC23A2Q9UGH3 650 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 APOBEC3BQ9UH17 382 aaKnown RBP12.27□□□□□ -0.45
USP40-205ENST00000430158 FAM169AQ9Y6X4 670 aa12.27□□□□□ -0.45
USP40-205ENST00000430158 LY6G6EA0A0G2JKS1 128 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 YY2O15391 372 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 AQP9O43315 295 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 SH3BP5O60239 455 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 VAPBO95292 243 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 TNFP01375 233 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 ELK3P41970 407 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 BLKP51451 505 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 PLTPP55058 493 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 ARL4CP56559 192 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 CTBSQ01459 385 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 GUCY2DQ02846 1103 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 FASTKD3Q14CZ7 662 aaKnown RBP12.26□□□□□ -0.45
USP40-205ENST00000430158 HIF1AQ16665 826 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 BBS9Q3SYG4 887 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 DNAJC21Q5F1R6 531 aaKnown RBP12.26□□□□□ -0.45
USP40-205ENST00000430158 PRRT3Q5FWE3 981 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 ZRANB3Q5FWF4 1079 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 RD3Q7Z3Z2 195 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 UNC5BQ8IZJ1 945 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 PDIK1LQ8N165 341 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 FSTL5Q8N475 847 aaPredicted RBP12.26□□□□□ -0.45
USP40-205ENST00000430158 NAT14Q8WUY8 206 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 LRRC39Q96DD0 335 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 BOCQ9BWV1 1114 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 SLC13A1Q9BZW2 595 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 ZDHHC3Q9NYG2 299 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 DLL3Q9NYJ7 618 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 PCOLCE2Q9UKZ9 415 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 PRKAB1Q9Y478 270 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 PRSS21Q9Y6M0 314 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 SLC30A1Q9Y6M5 507 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 RPS6KL1Q9Y6S9 549 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 U3KQA8 63 aa12.26□□□□□ -0.45
USP40-205ENST00000430158 H3BM21 787 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 TPP1O14773 563 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 NDC80O14777 642 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CD3EAPO15446 510 aaKnown RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 GRID2O43424 1007 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CDK14O94921 469 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 ASMTLO95671 621 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 PGAM1P18669 254 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 GNPDA1P46926 289 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CLCNKAP51800 687 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CAV1Q03135 178 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CALCOCO2Q13137 446 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 FRG1Q14331 258 aaKnown RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 ITIH4Q14624 930 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CRYMQ14894 314 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 RSPO4Q2I0M5 234 aaPredicted RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 TYSND1Q2T9J0 566 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 PROX2Q3B8N5 592 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 UAP1L1Q3KQV9 507 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 BCL7AQ4VC05 210 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CASC4Q6P4E1 433 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 OGFOD3Q6PK18 319 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 LVRNQ6Q4G3 990 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 PACS1Q6VY07 963 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 UNC5AQ6ZN44 842 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 MARK2Q7KZI7 788 aaKnown RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 C17orf82Q86X59 251 aaPredicted RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 SDR16C5Q8N3Y7 309 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 OR6P1Q8NGX9 317 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 OR4C6Q8NH72 309 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 LMX1AQ8TE12 382 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 ZNF669Q96BR6 464 aaPredicted RBP12.25□□□□□ -0.45
USP40-205ENST00000430158 SGF29Q96ES7 293 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 CAMK1GQ96NX5 476 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 OR2M4Q96R27 311 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 COPS8Q99627 209 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 NAT9Q9BTE0 207 aa12.25□□□□□ -0.45
USP40-205ENST00000430158 PHACTR1Q9C0D0 580 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms