RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 AARS2Q5JTZ9 985 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 ALG1LQ6GMV1 187 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PAOXQ6QHF9 649 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PAQR3Q6TCH7 311 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 LARP4Q71RC2 724 aaKnown RBP eCLIP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 GALNT4Q8N4A0 578 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 OVCA2Q8WZ82 227 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 LPGAT1Q92604 370 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 EME1Q96AY2 570 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 NSMCE3Q96MG7 304 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 YME1L1Q96TA2 773 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 ZBED2Q9BTP6 218 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 DERL2Q9GZP9 239 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 GID8Q9NWU2 228 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 RAB26Q9ULW5 256 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 AP4S1Q9Y587 144 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TYW5A2RUC4 315 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 LCHNA4D1U4 455 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TNFRSF10AO00220 468 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 UBFD1O14562 309 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 CLASP2O75122 1294 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 GJB5O95377 273 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 FGF4P08620 206 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 ARL1P40616 181 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TMED10P49755 219 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 LCP2Q13094 533 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 RNF219Q5W0B1 726 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PRMT9Q6P2P2 845 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 KLHL35Q6PF15 583 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TAS2R42Q7RTR8 314 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TRIM15Q9C019 465 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 RAI2Q9Y5P3 530 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 A0A0J9YYE9 177 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 BTN3A1O00481 513 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SCAMP3O14828 347 aaKnown RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PIP5K1BO14986 540 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ADAM12O43184 909 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PKMP14618 531 aaKnown RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ATF6P18850 670 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF140P52738 457 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 NME5P56597 212 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SH3BP2P78314 561 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 CLCQ05315 142 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 C10orf62Q5T681 223 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 HACD2Q6Y1H2 254 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 CHST9Q7L1S5 443 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 C16orf59Q7L2K0 433 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 TMCO2Q7Z6W1 182 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SNX31Q8N9S9 440 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PPWD1Q96BP3 646 aaKnown RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ROPN1LQ96C74 230 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ASIC4Q96FT7 647 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 TRIB3Q96RU7 358 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 GPR21Q99679 349 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ARMC7Q9H6L4 198 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 FBRSL1Q9HCM7 1045 aaKnown RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PCDHGA3Q9Y5H0 932 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ACTL7AQ9Y615 435 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 CASP8AP2Q9UKL3 1982 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ACOT8O14734 319 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 TBC1D4O60343 1298 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 HDCP19113 662 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 CHRM3P20309 590 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SH3BGRP55822 239 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 TWF1Q12792 350 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 RBBP7Q16576 425 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 UGT3A1Q6NUS8 523 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 TXNDC11Q6PKC3 985 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 DHFR2Q86XF0 187 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 OR9I1Q8NGQ6 314 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 IGSF21Q96ID5 467 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 ATOH8Q96SQ7 321 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PKP2Q99959 881 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SARS2Q9NP81 518 aaKnown RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SEMA4BQ9NPR2 832 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-204ENST00000392003 CD274Q9NZQ7 290 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PKP3Q9Y446 797 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PCDHGC4Q9Y5F7 938 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 DNAJC15Q9Y5T4 150 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 SLC30A1Q9Y6M5 507 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 FRMPD3Q5JV73 1810 aa9.56□□□□□ -0.88
COL6A3-204ENST00000392003 PRSS51A0A1B0GVH4 220 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF840PA6NDX5 716 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 H3BUI4 141 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 COCHO43405 550 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 HGFP14210 728 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 MC4RP32245 332 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SLC7A2P52569 658 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 IL2P60568 153 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TSNQ15631 228 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ADGRF1Q5T601 910 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 HERC6Q8IVU3 1022 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SPERTQ8NA61 448 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 ATP6V1E2Q96A05 226 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 HOPXQ9BPY8 73 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 TDRD1Q9BXT4 1180 aaKnown RBP9.55□□□□□ -0.88
COL6A3-204ENST00000392003 PCDHAC1Q9H158 963 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 IL1RL2Q9HB29 575 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 GKN1Q9NS71 199 aa9.55□□□□□ -0.88
COL6A3-204ENST00000392003 SAGE1Q9NXZ1 904 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms