RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 GPSM3Q9Y4H4 160 aa11.71□□□□□ -0.53
SNCA-202ENST00000345009 RPS6KL1Q9Y6S9 549 aa11.71□□□□□ -0.53
SNCA-202ENST00000345009 CCDC162PA2VCL2 907 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 AGAP14A8MT82 685 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 LMO7DNF2Z398 122 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TPP1O14773 563 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 SLC30A4O14863 429 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 KMOO15229 486 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 EIF3HO15372 352 aaKnown RBP eCLIP11.7□□□□□ -0.54
SNCA-202ENST00000345009 CD3EAPO15446 510 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 GRID2O43424 1007 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 KCNJ13O60928 360 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 SDC3O75056 442 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 USP1O94782 785 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 PGAM1P18669 254 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 POLD2P49005 469 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TTPAP49638 278 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 PLTPP55058 493 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 IL9RQ01113 521 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 GUCY2DQ02846 1103 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 BNIP3Q12983 259 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 THOC5Q13769 683 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 ANKRD20A4Q4UJ75 823 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 PYCR3Q53H96 274 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TPRG1LQ5T0D9 272 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 DBX2Q6ZNG2 339 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 MARK2Q7KZI7 788 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 TAF8Q7Z7C8 310 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 ADGRG6Q86SQ4 1221 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TMEM135Q86UB9 458 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TRAPPC5Q8IUR0 188 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 LMNTD2Q8IXW0 634 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 MPP5Q8N3R9 675 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 OTUD6BQ8N6M0 293 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 CALML6Q8TD86 181 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 RHBDD1Q8TEB9 315 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 PDXPQ96GD0 296 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 SIGLEC10Q96LC7 697 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 OR2M4Q96R27 311 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 EBNA1BP2Q99848 306 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 RTKNQ9BST9 563 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 VPS37BQ9H9H4 285 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 L2HGDHQ9H9P8 463 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 TREX1Q9NSU2 369 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 CATSPERZQ9NTU4 200 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 ZDHHC3Q9NYG2 299 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 NLGN3Q9NZ94 848 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 ATXN10Q9UBB4 475 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 MTRF1LQ9UGC7 380 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 GPR34Q9UPC5 381 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 DNMT3AQ9Y6K1 912 aaPredicted RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 TDRD6O60522 2096 aaKnown RBP11.7□□□□□ -0.54
SNCA-202ENST00000345009 DMXL1Q9Y485 3027 aa11.7□□□□□ -0.54
SNCA-202ENST00000345009 PCDH15Q96QU1 1955 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 SPTBN4Q9H254 2564 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ADAMTS9Q9P2N4 1935 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 QSOX1O00391 747 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 CCL22O00626 93 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 GAPDHSO14556 408 aaPredicted RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 VAPBO95292 243 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 GOT2P00505 430 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 ZNF8P17098 575 aaPredicted RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 ACRV1P26436 265 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 NMBRP28336 390 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 NSG1P42857 185 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 RPIAP49247 311 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ARSDP51689 593 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 SLC7A5Q01650 507 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 DHX9Q08211 1270 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 ITIH4Q14624 930 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 SHBQ15464 509 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 LONRF1Q17RB8 773 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 RNF187Q5TA31 235 aaPredicted RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 KIAA0930Q6ICG6 404 aaPredicted RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 LRRTM4Q86VH4 590 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 SERPINA9Q86WD7 417 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 GATAD2AQ86YP4 633 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 NAXDQ8IW45 347 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 PARP9Q8IXQ6 854 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 IFT20Q8IY31 132 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 RBFAQ8N0V3 343 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 NOA1Q8NC60 698 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 ART4Q93070 314 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ZNF669Q96BR6 464 aaPredicted RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 MFSD3Q96ES6 412 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ZNF778Q96MU6 729 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 TCF12Q99081 682 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 LRRC61Q9BV99 259 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 TMEM168Q9H0V1 697 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 FAM96AQ9H5X1 160 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 EPB41L5Q9HCM4 733 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ARFGAP3Q9NP61 516 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 MRPL40Q9NQ50 206 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 SLC2A6Q9UGQ3 507 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 ZC3H7BQ9UGR2 993 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 KLF15Q9UIH9 416 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 OAS3Q9Y6K5 1087 aaKnown RBP11.69□□□□□ -0.54
SNCA-202ENST00000345009 PCNX2A6NKB5 2137 aa11.69□□□□□ -0.54
SNCA-202ENST00000345009 TRBV5-4A0A0C4DH59 114 aa11.68□□□□□ -0.54
SNCA-202ENST00000345009 CHUKO15111 745 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms