RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 FAM47E-STBD1D6RA91 191 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 URODP06132 367 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 IL7RP16871 459 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 ATP5C1P36542 298 aaKnown RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 LIMK2P53671 638 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 RPS3AP61247 264 aaKnown RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 PCBP2Q15366 365 aaKnown RBP eCLIP8.63□□□□□ -1.033e-35■■■■■ 31.2
RTN3-202ENST00000339997 CELF3Q5SZQ8 465 aaKnown RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 BHLHB9Q6PI77 547 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 CYP20A1Q6UW02 462 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 RAB43Q86YS6 212 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 PHC3Q8NDX5 983 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 CENPNQ96H22 339 aaPredicted RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 FNDC11Q9BVV2 318 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 IDI2Q9BXS1 227 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 NFKBIZQ9BYH8 718 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 ZYG11BQ9C0D3 744 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 ING3Q9NXR8 418 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 RIC1Q4ADV7 1423 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 A0A0G2JN53 185 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 ELOVL7A1L3X0 281 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 SEPT4O43236 478 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 HCRTO43612 131 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 KHDRBS3O75525 346 aaKnown RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 CSF2P04141 144 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 CKBP12277 381 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 GPX6P59796 221 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 CLCQ05315 142 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 TOP3AQ13472 1001 aaPredicted RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 RNF180Q86T96 592 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 PNPLA1Q8N8W4 532 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 ZBTB8BQ8NAP8 495 aaPredicted RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 PTPN18Q99952 460 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 EMILIN2Q9BXX0 1053 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 NEUROD4Q9HD90 331 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 LGALS13Q9UHV8 139 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 YARS2Q9Y2Z4 477 aaKnown RBP8.63□□□□□ -1.03
RTN3-202ENST00000339997 SPACA6W5XKT8 324 aa8.63□□□□□ -1.03
RTN3-202ENST00000339997 TNS2Q63HR2 1409 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ABLIM1O14639 778 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SLC28A2O43868 658 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 GUCY1B2O75343 617 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TGDSO95455 350 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TRBC1P01850 177 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 LINGO3P0C6S8 592 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 LPOP22079 712 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 STT3AP46977 705 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 GANABQ14697 944 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 SNAPC1Q16533 368 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 FBXL19Q6PCT2 694 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ASB18Q6ZVZ8 466 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 DAW1Q8N136 415 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 LENG9Q96B70 501 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 FAM163AQ96GL9 167 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 TBX5Q99593 518 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SLC35C2Q9NQQ7 365 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 DTLQ9NZJ0 730 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 FBXO10Q9UK96 956 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MYH10P35580 1976 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 A0A1W2PQ72 361 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SAP18O00422 153 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 HCN1O60741 890 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 NDUFS2O75306 463 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MAFO75444 373 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 FOSL2P15408 326 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 CAPGP40121 348 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 GSCP56915 257 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 PLA2G4EQ3MJ16 856 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SLC25A52Q3SY17 297 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 C5orf22Q49AR2 442 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 RABL3Q5HYI8 236 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MEIOBQ8N635 442 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 LRRC15Q8TF66 581 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 FCRL4Q96PJ5 515 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MTERF1Q99551 399 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 HOPXQ9BPY8 73 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 SDCBP2Q9H190 292 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 SPON1Q9HCB6 807 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 OSER1Q9NX31 292 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TBL1XO60907 577 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ITGB1P05556 798 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 BMP7P18075 431 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 KIR3DL1P43629 444 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 GNPDA1P46926 289 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 TTPAP49638 278 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 ZNF135P52742 658 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 NKX2-5P52952 324 aaPredicted RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 EPHB3P54753 998 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MANFP55145 182 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 SLC18A2Q05940 514 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 MERTKQ12866 999 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 INTS11Q5TA45 600 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 C6orf89Q6UWU4 347 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 IGDCC3Q8IVU1 814 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 OR8H3Q8N146 312 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 DTX3Q8N9I9 347 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 OR7D4Q8NG98 312 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 BARD1Q99728 777 aaKnown RBP8.62□□□□□ -1.03
RTN3-202ENST00000339997 DKK3Q9UBP4 350 aa8.62□□□□□ -1.03
RTN3-202ENST00000339997 AGO1Q9UL18 857 aaKnown RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms