RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GSTCDQ8NEC7 633 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 TCF12Q99081 682 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 IDI2Q9BXS1 227 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 ELAC1Q9H777 363 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 CTPS2Q9NRF8 586 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 MED31Q9Y3C7 131 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 A8MUA0 341 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 HDAC3O15379 428 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 DDX3YO15523 660 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 NADKO95544 446 aaPredicted RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 FGF1P05230 155 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 RPL17P18621 184 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 SEPHS1P49903 392 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 TRAP1Q12931 704 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 UBAP2Q5T6F2 1119 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 CRYBG2Q8N1P7 616 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 RNF121Q9H920 327 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 LRTM1Q9HBL6 345 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 COL6A1P12109 1028 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 LAMP2P13473 410 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 KELP23276 732 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 RAB2AP61019 212 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 GTF2BQ00403 316 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 SLC13A2Q13183 592 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 TLR1Q15399 786 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 TCEAL6Q6IPX3 200 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 SHC3Q92529 594 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 CYP2S1Q96SQ9 504 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 GPR21Q99679 349 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 AK5Q9Y6K8 562 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 FOXO6A8MYZ6 492 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PRR5-ARHGAP8B1AHC4 643 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 SNAP91O60641 907 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 ALOX5P09917 674 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 GABRB2P47870 512 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 ARHGAP8P85298 464 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 MPP1Q00013 466 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 DDR1Q08345 913 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PPM1JQ5JR12 505 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 EIF1ADQ8N9N8 165 aaKnown RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 CD99L2Q8TCZ2 262 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 NXNL1Q96CM4 212 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PGM2Q96G03 612 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 KCTD15Q96SI1 283 aaPredicted RBP12.53□□□□□ -0.4
SDC3-201ENST00000336798 LRMDAQ9H2I8 198 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 COLEC10Q9Y6Z7 277 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PMF1-BGLAPU3KQ54 211 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 NOTOA8MTQ0 251 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 E9PAM4 449 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 ATP6V0D1P61421 351 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 BNIP2Q12982 314 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 NDUFA9Q16795 377 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 VPS26BQ4G0F5 336 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 DUPD1Q68J44 220 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 PRR23BQ6ZRT6 265 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 SFRP1Q8N474 314 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 ZNF615Q8N8J6 731 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 SLC38A3Q99624 504 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 AP4B1Q9Y6B7 739 aa12.53□□□□□ -0.4
SDC3-201ENST00000336798 RPP40O75818 363 aaKnown RBP12.52□□□□□ -0.4
SDC3-201ENST00000336798 NCK1P16333 377 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 POLR2JP52435 117 aaKnown RBP12.52□□□□□ -0.4
SDC3-201ENST00000336798 DLG1Q12959 904 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 LARS2Q15031 903 aaKnown RBP12.52□□□□□ -0.4
SDC3-201ENST00000336798 ILDR1Q86SU0 546 aaPredicted RBP12.52□□□□□ -0.4
SDC3-201ENST00000336798 HAS1Q92839 578 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 CLPTM1LQ96KA5 538 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 RNPEPL1Q9HAU8 725 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 MAFFQ9ULX9 164 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 ZMYM2Q9UBW7 1377 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 SERPINA3P01011 423 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 ASGR1P07306 291 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 GDI2P50395 445 aaKnown RBP12.52□□□□□ -0.4
SDC3-201ENST00000336798 ACTR3P61158 418 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 NOMO3P69849 1222 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 TUBA3CQ13748 450 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 PCBP2Q15366 365 aaKnown RBP eCLIP12.52□□□□□ -0.4
SDC3-201ENST00000336798 TBC1D25Q3MII6 688 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 FAM71AQ8IYT1 594 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 TBX5Q99593 518 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 SPATA9Q9BWV2 254 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 CDH7Q9ULB5 785 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 PCDHGC4Q9Y5F7 938 aa12.52□□□□□ -0.4
SDC3-201ENST00000336798 A0A0G2JN53 185 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 FAM149AA5PLN7 773 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 C9IYK1 514 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 H3BSH0 61 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 MEIS2O14770 477 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 MFSD11O43934 449 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 STATHP02808 62 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 PRKCHP24723 683 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 PPM1AP35813 382 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 GJA9P57773 515 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 ENPEPQ07075 957 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 CHAF1BQ13112 559 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 GCNT6Q5T4J0 391 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 VWA5B1Q5TIE3 1220 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 MFSD14AQ96MC6 490 aa12.52□□□□□ -0.41
SDC3-201ENST00000336798 TAPBPLQ9BX59 468 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms