RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Ccdc117Q6PB51 277 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Dpy19l3Q71B07 716 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Olfr301Q7TS04 311 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Olfr293Q7TS10 336 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Skida1Q80YR3 822 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ofcc1Q8BGX4 166 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Vrk2Q8BN21 503 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Lpcat2Q8BYI6 544 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Psapl1Q8C1C1 522 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Olfr449Q8VGW8 311 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Pcdhb18Q91Y02 792 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Atg13Q91YI1 516 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Q99LU8 229 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ankrd61Q9CQM6 421 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Mri1Q9CQT1 369 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 CtsmQ9JL96 333 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Nufip1Q9QXX8 484 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 FarsbQ9WUA2 589 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm4907B1AXB9 411 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm2888K7N746 267 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Sod3O09164 251 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 NmbrO54799 390 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 EdnrbP48302 442 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Dsc2P55292 902 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Coq10bQ3THF9 240 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Lsmem1Q3UQS2 128 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gpr149Q3UVY1 732 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Fam46cQ5SSF7 391 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Slc25a23Q6GQS1 467 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Eif2s1Q6ZWX6 315 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Sytl5Q80T23 753 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Mfn1Q811U4 741 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm6377Q8BHV4 303 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Znf451Q8C0P7 1056 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Hist1h2aaQ8CGP4 129 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Traf3ip2Q8N7N6 555 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Atp6v1c2Q99L60 427 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 VasnQ9CZT5 673 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Mrto4Q9D0I8 239 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Spatc1lQ9D9W0 342 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 NckipsdQ9ESJ4 714 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Jam2Q9JI59 298 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Carm1Q9WVG6 608 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 ApipQ9WVQ5 241 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Otud3B1AZ99 396 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm3642K7N6V4 267 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Tulp3O88413 460 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Slc2a2P14246 523 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Rps6ka3P18654 740 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Rab23P35288 237 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 DbtP53395 482 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Pip5k1bP70181 539 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 SbplQ3TUY3 232 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Nr0b1Q61066 472 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Wdtc1Q80ZK9 677 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Kctd13Q8BGV7 329 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Stk32cQ8QZV4 488 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gtf2a1lQ8R4I4 468 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Pcdh18Q8VHR0 1134 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Mob2Q8VI63 235 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Dlg2Q91XM9 852 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Tmbim6Q9D2C7 237 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 PacrglQ9D3X5 248 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ovca2Q9D7E3 225 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Atg7Q9D906 698 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ndst3Q9EQH7 873 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Rfx5Q9JL61 658 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Kat6bQ8BRB7 1872 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Arap2Q8BZ05 1703 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Itga8A2ARA8 1062 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ccdc7bE9Q9Y3 381 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm12794L7MTS5 483 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gm8374L7N2A9 172 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Lgals7O54974 136 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ldb1P70662 411 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ptchd3Q0EEE2 906 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Itga1Q3V3R4 1179 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Usp17laQ61068 526 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Q810N5 247 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Cxcr1Q810W6 351 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 BoraQ8BS90 525 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Mpp7Q8BVD5 576 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Adamts2Q8C9W3 1213 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Smco1Q8CEZ1 214 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ddx52Q8K301 598 aaKnown RBP10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Olfr847Q8VFF4 312 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 EbplQ9D0P0 206 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Haus5Q9D786 619 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Gtf2h2Q9JIB4 396 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Scamp5Q9JKD3 235 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ubr2Q6WKZ8 1755 aa10.22□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Olfr1200A2ATJ4 336 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 SmoktcrA2KF29 484 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Vmn2r84D3YWE3 849 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Rnf169E9Q7F2 694 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 AcadmP45952 421 aaKnown RBP10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Q3U4G0 281 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Ankrd13bQ5F259 626 aa10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 Trim24Q64127 1051 aaKnown RBP10.21□□□□□ -0.77
Ccdc40-201ENSMUST00000035935 RgnQ64374 299 aa10.21□□□□□ -0.77
Retrieved 100 of 22,080 RNA–protein pairs in 40.7 ms