Protein–RNA interactions for Protein: Q8VHR0

Pcdh18, Protocadherin 18, mousemouse

Predictions only

Length 1,134 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh18Q8VHR0 Gm25239-201ENSMUST00000174915 86 ntBASIC33.15■■■□□ 2.9
Pcdh18Q8VHR0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Pcdh18Q8VHR0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Pcdh18Q8VHR0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Pcdh18Q8VHR0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Pcdh18Q8VHR0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
Pcdh18Q8VHR0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
Pcdh18Q8VHR0 Psd-208ENSMUST00000224556 2034 ntBASIC30.37■■■□□ 2.45
Pcdh18Q8VHR0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
Pcdh18Q8VHR0 Gm15042-201ENSMUST00000120212 883 ntBASIC29.56■■■□□ 2.32
Pcdh18Q8VHR0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Pcdh18Q8VHR0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Pcdh18Q8VHR0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Pcdh18Q8VHR0 Gm15045-201ENSMUST00000117359 883 ntBASIC28.97■■■□□ 2.23
Pcdh18Q8VHR0 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Pcdh18Q8VHR0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
Pcdh18Q8VHR0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Pcdh18Q8VHR0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Pcdh18Q8VHR0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Pcdh18Q8VHR0 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Pcdh18Q8VHR0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Pcdh18Q8VHR0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC28.66■■■□□ 2.18
Pcdh18Q8VHR0 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
Pcdh18Q8VHR0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Pcdh18Q8VHR0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Pcdh18Q8VHR0 Gm24109-201ENSMUST00000175489 103 ntBASIC28.43■■■□□ 2.14
Pcdh18Q8VHR0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Pcdh18Q8VHR0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Pcdh18Q8VHR0 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
Pcdh18Q8VHR0 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.19■■■□□ 2.1
Pcdh18Q8VHR0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdh18Q8VHR0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pcdh18Q8VHR0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Pcdh18Q8VHR0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdh18Q8VHR0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
Pcdh18Q8VHR0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC27.94■■■□□ 2.06
Pcdh18Q8VHR0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
Pcdh18Q8VHR0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.85■■■□□ 2.05
Pcdh18Q8VHR0 Gm23366-201ENSMUST00000175022 89 ntBASIC27.8■■■□□ 2.04
Pcdh18Q8VHR0 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Pcdh18Q8VHR0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Pcdh18Q8VHR0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Pcdh18Q8VHR0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Pcdh18Q8VHR0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Pcdh18Q8VHR0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.63■■■□□ 2.01
Pcdh18Q8VHR0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC27.62■■■□□ 2.01
Pcdh18Q8VHR0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Pcdh18Q8VHR0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
Pcdh18Q8VHR0 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC27.53■■■□□ 2
Pcdh18Q8VHR0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdh18Q8VHR0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdh18Q8VHR0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Pcdh18Q8VHR0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Pcdh18Q8VHR0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
Pcdh18Q8VHR0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
Pcdh18Q8VHR0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.18■■□□□ 1.94
Pcdh18Q8VHR0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.17■■□□□ 1.94
Pcdh18Q8VHR0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.15■■□□□ 1.94
Pcdh18Q8VHR0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.93
Pcdh18Q8VHR0 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Pcdh18Q8VHR0 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Pcdh18Q8VHR0 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
Pcdh18Q8VHR0 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Pcdh18Q8VHR0 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.98■■□□□ 1.91
Pcdh18Q8VHR0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Pcdh18Q8VHR0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Pcdh18Q8VHR0 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
Pcdh18Q8VHR0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Pcdh18Q8VHR0 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Pcdh18Q8VHR0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
Pcdh18Q8VHR0 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Pcdh18Q8VHR0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Pcdh18Q8VHR0 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Pcdh18Q8VHR0 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.77■■□□□ 1.88
Pcdh18Q8VHR0 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.7■■□□□ 1.87
Pcdh18Q8VHR0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Pcdh18Q8VHR0 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Pcdh18Q8VHR0 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pcdh18Q8VHR0 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
Pcdh18Q8VHR0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Pcdh18Q8VHR0 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC26.49■■□□□ 1.83
Pcdh18Q8VHR0 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Pcdh18Q8VHR0 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Pcdh18Q8VHR0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Pcdh18Q8VHR0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.38■■□□□ 1.81
Pcdh18Q8VHR0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdh18Q8VHR0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdh18Q8VHR0 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
Pcdh18Q8VHR0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Pcdh18Q8VHR0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC26.27■■□□□ 1.8
Pcdh18Q8VHR0 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pcdh18Q8VHR0 Zxda-201ENSMUST00000117281 2621 ntBASIC26.23■■□□□ 1.79
Pcdh18Q8VHR0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdh18Q8VHR0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
Pcdh18Q8VHR0 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Pcdh18Q8VHR0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdh18Q8VHR0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Pcdh18Q8VHR0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
Pcdh18Q8VHR0 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pcdh18Q8VHR0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 14 ms