RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MYBPC2Q14324 1141 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 HSP90AA5PQ58FG0 334 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 TANGO6Q9C0B7 1094 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 GBP2P32456 591 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 PIP4K2BP78356 416 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 ZRSR1Q15695 479 aaKnown RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 PLEKHG3A1L390 1219 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 MYLK4Q86YV6 388 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 MAP3K20Q9NYL2 800 aaKnown RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 TESPA1A2RU30 521 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 PAX7P23759 505 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 FLT3P36888 993 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 ZCCHC8Q6NZY4 707 aaKnown RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 RBBP5Q15291 538 aaKnown RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 WDR66Q8TBY9 1149 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 TSPAN18Q96SJ8 248 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 TCHPQ9BT92 498 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 BCL2L13Q9BXK5 485 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 KIF11P52732 1056 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 RSPH1Q8WYR4 309 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 ZMAT2Q96NC0 199 aaKnown RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 TRAIPQ9BWF2 469 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 SEPT11Q9NVA2 429 aaKnown RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 PRDM4Q9UKN5 801 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 CROCCQ5TZA2 2017 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 MIPOL1Q8TD10 442 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 FBXL5Q9UKA1 691 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 HOXA2O43364 376 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 SUGT1Q9Y2Z0 365 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 ESPNB1AK53 854 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 OFD1O75665 1012 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 SEPT7Q16181 437 aaKnown RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 RNF168Q8IYW5 571 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 C16orf87Q6PH81 154 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 FEZ2Q9UHY8 353 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-221ENST00000641996 ADD2P35612 726 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 GIMAP6Q6P9H5 292 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC89Q8N998 374 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 PHC3Q8NDX5 983 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 UNCXA6NJT0 531 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 TRAK2O60296 914 aa4.22□□□□□ -1.73
SCN1A-221ENST00000641996 RANBP1P43487 201 aa4.21□□□□□ -1.73
SCN1A-221ENST00000641996 FAPQ12884 760 aa4.21□□□□□ -1.73
SCN1A-221ENST00000641996 MKL2Q9ULH7 1088 aa4.21□□□□□ -1.73
SCN1A-221ENST00000641996 GOLGA6L10A6NI86 522 aa4.21□□□□□ -1.73
SCN1A-221ENST00000641996 IMMTQ16891 758 aaKnown RBP4.21□□□□□ -1.73
SCN1A-221ENST00000641996 AMOTQ4VCS5 1084 aa4.21□□□□□ -1.73
SCN1A-221ENST00000641996 SREK1Q8WXA9 508 aaKnown RBP4.21□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC152Q4G0S7 254 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 UTP14CQ5TAP6 766 aaKnown RBP4.21□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM52Q96A61 297 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 RPGRIP1LQ68CZ1 1315 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 CAND2O75155 1236 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 C11orf96Q7Z7L8 435 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 DRC7Q8IY82 874 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 RRAGDQ9NQL2 400 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-221ENST00000641996 C17orf50Q8WW18 174 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 TMEM127O75204 238 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 C22orf23Q9BZE7 217 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 CHD5Q8TDI0 1954 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 DMPKQ09013 629 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 AKNAD1Q5T1N1 836 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 SMTNL1A8MU46 457 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 HSP90AA4PQ58FG1 418 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 OGFOD1Q8N543 542 aa4.21□□□□□ -1.74
SCN1A-221ENST00000641996 FOSP01100 380 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-221ENST00000641996 C10orf62Q5T681 223 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-221ENST00000641996 CNTRLQ7Z7A1 2325 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 TMEM110Q86TL2 294 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 FAM114A1Q8IWE2 563 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 COMMD10Q9Y6G5 202 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 DNAAF4Q8WXU2 420 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 RASSF4Q9H2L5 321 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 ARHGEF10LQ9HCE6 1279 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 PRDM2Q13029 1718 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 KIF1CO43896 1103 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 PUS10Q3MIT2 529 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 B4GALNT3Q6L9W6 998 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 CHPF2Q9P2E5 772 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 PPP1R9AQ9ULJ8 1098 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 PABPN1LA6NDY0 278 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 IRX1P78414 480 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 DDX46Q7L014 1031 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 GBP7Q8N8V2 638 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 TRMT1Q9NXH9 659 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 CHMP5Q9NZZ3 219 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 NUB1Q9Y5A7 615 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 AK9Q5TCS8 1911 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 GOLGA6L10A0A0M3HER8 536 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 PSMD6Q15008 389 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 SPECC1Q5M775 1068 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 FAM47EQ6ZV65 393 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 MGARPQ8TDB4 240 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 ZNF330Q9Y3S2 320 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 JDP2Q8WYK2 163 aa4.2□□□□□ -1.74
SCN1A-221ENST00000641996 TMA7Q9Y2S6 64 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 BMS1Q14692 1282 aaKnown RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 MAGED1Q9Y5V3 778 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-221ENST00000641996 NAT2P11245 290 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms