RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 DYNC1I1O14576 645 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 SETSIPP0DME0 302 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CFAP65Q6ZU64 1925 aaKnown RBP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CCER2I3L3R5 266 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC172P0C7W6 258 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 STMN1P16949 149 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 SPA17Q15506 151 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 ALS2CR12Q96Q35 445 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 NAA15Q9BXJ9 866 aaKnown RBP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CROCCQ5TZA2 2017 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 WHAMMQ8TF30 809 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 WASF1Q92558 559 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 TSG101Q99816 390 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 IQCGQ9H095 443 aaKnown RBP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 MTMR7Q9Y216 660 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 USH1CQ9Y6N9 552 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 MIA2Q96PC5 1412 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 NEUROD6Q96NK8 337 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 RB1CC1Q8TDY2 1594 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 RRBP1Q9P2E9 1410 aaKnown RBP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC69A6NI79 296 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 ZBTB24O43167 697 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-212ENST00000636194 RIC3Q7Z5B4 369 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC110Q8TBZ0 833 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 RAPGEF4Q8WZA2 1011 aa6.99□□□□□ -1.29
SCN1A-212ENST00000636194 ZKSCAN2Q63HK3 967 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 RBM25P49756 843 aaKnown RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 AAMPQ13685 434 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 TTC16Q8NEE8 873 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 BIRC2Q13490 618 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 KIF2AO00139 706 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 CTNNBL1Q8WYA6 563 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 SUDS3Q9H7L9 328 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 GOPCQ9HD26 462 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC192P0DO97 292 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 RAB3IPQ96QF0 476 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 SPC25Q9HBM1 224 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 RIOK3O14730 519 aaKnown RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 STXBP4Q6ZWJ1 553 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 USP37Q86T82 979 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 DNAJC2Q99543 621 aaKnown RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 TIMELESSQ9UNS1 1208 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 MYCNP04198 464 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 EIF5P55010 431 aaKnown RBP6.98□□□□□ -1.29
SCN1A-212ENST00000636194 STK38Q15208 465 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC158Q5M9N0 1113 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC102AQ96A19 550 aa6.98□□□□□ -1.29
SCN1A-212ENST00000636194 EVC2Q86UK5 1308 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 MAP3K7CLP57077 242 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 ANKS4BQ8N8V4 417 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 GABPB2Q8TAK5 448 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 ZNF526Q8TF50 670 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC96Q2M329 555 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 FKBP15Q5T1M5 1219 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 SEPT14Q6ZU15 432 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 EIF2S2P20042 333 aaKnown RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 ARHGAP29Q52LW3 1261 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 CUL5Q93034 780 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 EPSTI1Q96J88 318 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 PKNOX2Q96KN3 472 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 TTLL12Q14166 644 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 NCBP1Q09161 790 aaKnown RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 CCDC83Q8IWF9 413 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 ZSCAN29Q8IWY8 852 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 MACROD2A1Z1Q3 448 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 CEP120Q8N960 986 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 PSPC1Q8WXF1 523 aaKnown RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 API5Q9BZZ5 524 aaKnown RBP6.97□□□□□ -1.29
SCN1A-212ENST00000636194 MRVI1Q9Y6F6 885 aa6.97□□□□□ -1.29
SCN1A-212ENST00000636194 CHMP2AO43633 222 aa6.96□□□□□ -1.29
SCN1A-212ENST00000636194 FOSBP53539 338 aa6.96□□□□□ -1.29
SCN1A-212ENST00000636194 GBP7Q8N8V2 638 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-212ENST00000636194 STMN4Q9H169 189 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-212ENST00000636194 BAZ1AQ9NRL2 1556 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-212ENST00000636194 FKBP5Q13451 457 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-212ENST00000636194 WDR78Q5VTH9 848 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 PDCL2Q8N4E4 241 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 SYNCQ9H7C4 482 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 CLIP2Q9UDT6 1046 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 SMTNL1A8MU46 457 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 CUL4BQ13620 913 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 OTUD6BQ8N6M0 293 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 PODXL2Q9NZ53 605 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 USO1O60763 962 aaKnown RBP6.96□□□□□ -1.3
SCN1A-212ENST00000636194 PDE4AP27815 886 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 XPCQ01831 940 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-212ENST00000636194 PRR16Q569H4 304 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 SARNPP82979 210 aaKnown RBP6.96□□□□□ -1.3
SCN1A-212ENST00000636194 CWC25Q9NXE8 425 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-212ENST00000636194 MYO9BQ13459 2157 aa6.96□□□□□ -1.3
SCN1A-212ENST00000636194 ZBTB16Q05516 673 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 MAP7Q14244 749 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 NFKBIBQ15653 356 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 ZNF354CQ86Y25 554 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 FBF1Q8TES7 1133 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 PAIP2Q9BPZ3 127 aaKnown RBP6.95□□□□□ -1.3
SCN1A-212ENST00000636194 NSRP1Q9H0G5 558 aaKnown RBP6.95□□□□□ -1.3
SCN1A-212ENST00000636194 PLIN1O60240 522 aa6.95□□□□□ -1.3
SCN1A-212ENST00000636194 SSBP05455 408 aaKnown RBP eCLIP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms