RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	OSBPL3	Q9H4L5	887 aa		6.28	□□□□□ -1.4
CNOT1-223	ENST00000628857	CYLD	Q9NQC7	956 aa		6.28	□□□□□ -1.4
CNOT1-223	ENST00000628857	GMPR2	Q9P2T1	348 aa	Known RBP	6.28	□□□□□ -1.4
CNOT1-223	ENST00000628857	SKI	P12755	728 aa		6.27	□□□□□ -1.41
CNOT1-223	ENST00000628857	EML3	Q32P44	896 aa		6.27	□□□□□ -1.41
CNOT1-223	ENST00000628857	C14orf37	Q86TY3	774 aa		6.27	□□□□□ -1.41
CNOT1-223	ENST00000628857	UCN2	Q96RP3	112 aa		6.27	□□□□□ -1.41
CNOT1-223	ENST00000628857	SOS2	Q07890	1332 aa	Predicted RBP	6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	C11orf95	C9JLR9	678 aa	Predicted RBP	6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	WASL	O00401	505 aa	Predicted RBP	6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	BMP2	P12643	396 aa		6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	BMP1	P13497	986 aa		6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	SCTR	P47872	440 aa		6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	PURB	Q96QR8	312 aa	Known RBP	6.26	□□□□□ -1.41
CNOT1-223	ENST00000628857	USP17L5	A8MUK1	530 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	PIK3CD	O00329	1044 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	RNF144A	P50876	292 aa	Predicted RBP	6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	CLN3	Q13286	438 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	ESCO1	Q5FWF5	840 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	TBC1D9	Q6ZT07	1266 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	TRIM50	Q86XT4	487 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	PPP1R12C	Q9BZL4	782 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	ZNF777	Q9ULD5	760 aa	Predicted RBP	6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	NOD1	Q9Y239	953 aa		6.25	□□□□□ -1.41
CNOT1-223	ENST00000628857	POTEC	B2RU33	542 aa		6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857	NPAS3	Q8IXF0	933 aa		6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857	XAGE2	Q96GT9	111 aa		6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857	ESYT1	Q9BSJ8	1104 aa		6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857	TFIP11	Q9UBB9	837 aa	Known RBP	6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857	PCDHGA11	Q9Y5H2	935 aa		6.24	□□□□□ -1.41
CNOT1-223	ENST00000628857		A0A1W2PRU2	124 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	PALM3	A6NDB9	673 aa	Predicted RBP	6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	TTLL8	A6PVC2	850 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	ATP1A2	P50993	1020 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	RELB	Q01201	579 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	NCOA4	Q13772	614 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	OXLD1	Q5BKU9	147 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	WDR44	Q5JSH3	913 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	C6orf118	Q5T5N4	469 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	AGBL1	Q96MI9	1066 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	SERPINA10	Q9UK55	444 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	HRH3	Q9Y5N1	445 aa		6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	MAFB	Q9Y5Q3	323 aa	Predicted RBP	6.23	□□□□□ -1.41
CNOT1-223	ENST00000628857	USP17L3	A6NCW0	530 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	USP17L4	A6NCW7	530 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	SNRPB	P14678	240 aa	Known RBP	6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	6.22	□□□□□ -1.41	2e-6	■□□□□ 10.2
CNOT1-223	ENST00000628857	USP17L2	Q6R6M4	530 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	USP17L1	Q7RTZ2	530 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	LARGE2	Q8N3Y3	721 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	SLC4A9	Q96Q91	983 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	GRIP2	Q9C0E4	1043 aa		6.22	□□□□□ -1.41
CNOT1-223	ENST00000628857	MAN1A2	O60476	641 aa		6.21	□□□□□ -1.42
CNOT1-223	ENST00000628857	CNKSR1	Q969H4	720 aa		6.21	□□□□□ -1.42
CNOT1-223	ENST00000628857	NLRP3	Q96P20	1036 aa		6.21	□□□□□ -1.42
CNOT1-223	ENST00000628857	INSM2	Q96T92	566 aa	Predicted RBP	6.21	□□□□□ -1.42
CNOT1-223	ENST00000628857	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.21	□□□□□ -1.42
CNOT1-223	ENST00000628857	SPATA31C2	B4DYI2	1134 aa		6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857		M0R2N6	131 aa		6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	ZBTB7B	O15156	539 aa	Predicted RBP	6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	INHA	P05111	366 aa		6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	CTSO	P43234	321 aa	Predicted RBP	6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	RNF217	Q8TC41	542 aa		6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	MKRN1	Q9UHC7	482 aa	Known RBP	6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	DNMT3L	Q9UJW3	386 aa		6.2	□□□□□ -1.42
CNOT1-223	ENST00000628857	BACH1	O14867	736 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	IL2RA	P01589	272 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	SCNN1D	P51172	638 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	GTF2I	P78347	998 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	CENPC	Q03188	943 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	MTFR1	Q15390	333 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	CFAP70	Q5T0N1	1121 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	KANK4	Q5T7N3	995 aa	Predicted RBP	6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	LYSMD3	Q7Z3D4	306 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	SIX5	Q8N196	739 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	VRTN	Q9H8Y1	702 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	ETNK1	Q9HBU6	452 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	ARHGEF10L	Q9HCE6	1279 aa		6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	POLM	Q9NP87	494 aa	Predicted RBP	6.19	□□□□□ -1.42
CNOT1-223	ENST00000628857	FAM196B	A6NMK8	535 aa		6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	TMEM229A	B2RXF0	380 aa		6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	GDF10	P55107	478 aa		6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	DEPDC4	Q8N2C3	294 aa		6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	DNAAF2	Q9NVR5	837 aa	Known RBP	6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	NXF1	Q9UBU9	619 aa	Known RBP	6.18	□□□□□ -1.42
CNOT1-223	ENST00000628857	MEN1	O00255	615 aa		6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	CDK2AP1	O14519	115 aa		6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	LMOD1	P29536	600 aa	Predicted RBP	6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	SMTN	P53814	917 aa		6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	SRPK2	P78362	688 aa	Known RBP	6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	PPARGC1B	Q86YN6	1023 aa	Known RBP	6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	OGFOD1	Q8N543	542 aa		6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	CCDC97	Q96F63	343 aa	Predicted RBP	6.17	□□□□□ -1.42
CNOT1-223	ENST00000628857	SLC35F4	A4IF30	521 aa		6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	DKK1	O94907	266 aa		6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	CLDN10	P78369	228 aa		6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	ELOA	Q14241	798 aa	Known RBP	6.16	□□□□□ -1.42
CNOT1-223	ENST00000628857	SLC27A3	Q5K4L6	730 aa		6.16	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms