RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 ADAMTS8Q9UP79 889 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 NUDCQ9Y266 331 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 PNISRQ8TF01 805 aaKnown RBP18.23■□□□□ 0.51
NEK3-210ENST00000620675 RSPH6AQ9H0K4 717 aa18.23■□□□□ 0.51
NEK3-210ENST00000620675 OVOS2A0A0G2JMS6 1433 aa18.23■□□□□ 0.51
NEK3-210ENST00000620675 RAPGEF4Q8WZA2 1011 aa18.22■□□□□ 0.51
NEK3-210ENST00000620675 VIRMAQ69YN4 1812 aaKnown RBP18.21■□□□□ 0.51
NEK3-210ENST00000620675 PRKAR2BP31323 418 aa18.21■□□□□ 0.51
NEK3-210ENST00000620675 FAM182BQ5T319 152 aa18.21■□□□□ 0.51
NEK3-210ENST00000620675 PHACTR3Q96KR7 559 aa18.21■□□□□ 0.51
NEK3-210ENST00000620675 DLG5Q8TDM6 1919 aa18.21■□□□□ 0.51
NEK3-210ENST00000620675 SENP3-EIF4A1A0A087X0R7 540 aa18.21■□□□□ 0.51
NEK3-210ENST00000620675 TATP17735 454 aaPredicted RBP18.2■□□□□ 0.5
NEK3-210ENST00000620675 CCDC146Q8IYE0 955 aa18.2■□□□□ 0.5
NEK3-210ENST00000620675 WDR43Q15061 677 aaKnown RBP eCLIP18.19■□□□□ 0.5
NEK3-210ENST00000620675 CCER2I3L3R5 266 aa18.19■□□□□ 0.5
NEK3-210ENST00000620675 DDB1Q16531 1140 aa18.18■□□□□ 0.5
NEK3-210ENST00000620675 FAM9BQ8IZU0 186 aa18.18■□□□□ 0.5
NEK3-210ENST00000620675 TNS2Q63HR2 1409 aa18.18■□□□□ 0.5
NEK3-210ENST00000620675 PLEKHF1Q96S99 279 aa18.18■□□□□ 0.5
NEK3-210ENST00000620675 FCHSD2O94868 740 aa18.17■□□□□ 0.5
NEK3-210ENST00000620675 CYP27B1O15528 508 aa18.16■□□□□ 0.5
NEK3-210ENST00000620675 ILDR2Q71H61 639 aa18.16■□□□□ 0.5
NEK3-210ENST00000620675 MARCH10Q8NA82 808 aaPredicted RBP18.16■□□□□ 0.5
NEK3-210ENST00000620675 ZCRB1Q8TBF4 217 aaKnown RBP18.16■□□□□ 0.5
NEK3-210ENST00000620675 DDX54Q8TDD1 881 aaKnown RBP18.16■□□□□ 0.5
NEK3-210ENST00000620675 EXOC5O00471 708 aa18.16■□□□□ 0.5
NEK3-210ENST00000620675 CDCA7Q9BWT1 371 aaPredicted RBP18.16■□□□□ 0.5
NEK3-210ENST00000620675 MTHFSDQ2M296 383 aaKnown RBP18.15■□□□□ 0.5
NEK3-210ENST00000620675 SBF2Q86WG5 1849 aa18.15■□□□□ 0.5
NEK3-210ENST00000620675 TOGARAM1Q9Y4F4 1720 aa18.14■□□□□ 0.49
NEK3-210ENST00000620675 KRT27Q7Z3Y8 459 aa18.13■□□□□ 0.49
NEK3-210ENST00000620675 PDE3BQ13370 1112 aa18.12■□□□□ 0.49
NEK3-210ENST00000620675 ZNF530Q6P9A1 599 aaPredicted RBP18.12■□□□□ 0.49
NEK3-210ENST00000620675 DOT1LQ8TEK3 1739 aa18.12■□□□□ 0.49
NEK3-210ENST00000620675 PLEKHO1Q53GL0 409 aaPredicted RBP18.11■□□□□ 0.49
NEK3-210ENST00000620675 ITGB4P16144 1822 aa18.11■□□□□ 0.49
NEK3-210ENST00000620675 SPG7Q9UQ90 795 aa18.11■□□□□ 0.49
NEK3-210ENST00000620675 RRP7AQ9Y3A4 280 aaKnown RBP18.11■□□□□ 0.49
NEK3-210ENST00000620675 SCN11AQ9UI33 1791 aa18.11■□□□□ 0.49
NEK3-210ENST00000620675 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.1■□□□□ 0.494e-7■■■■□ 22.1
NEK3-210ENST00000620675 PCDH11XQ9BZA7 1347 aa18.1■□□□□ 0.49
NEK3-210ENST00000620675 PCDH11YQ9BZA8 1340 aa18.1■□□□□ 0.49
NEK3-210ENST00000620675 PHKG2P15735 406 aa18.1■□□□□ 0.49
NEK3-210ENST00000620675 PTF1AQ7RTS3 328 aa18.09■□□□□ 0.49
NEK3-210ENST00000620675 RUNDC1Q96C34 613 aa18.09■□□□□ 0.49
NEK3-210ENST00000620675 AMOTQ4VCS5 1084 aa18.08■□□□□ 0.49
NEK3-210ENST00000620675 MPRIPQ6WCQ1 1025 aa18.08■□□□□ 0.48
NEK3-210ENST00000620675 KDM6AO15550 1401 aaPredicted RBP18.08■□□□□ 0.48
NEK3-210ENST00000620675 APAF1O14727 1248 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 NEUROD2Q15784 382 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 MAPK8IP3Q9UPT6 1336 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 IFNL2Q8IZJ0 200 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 ACSBG1Q96GR2 724 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 LGR6Q9HBX8 967 aa18.07■□□□□ 0.48
NEK3-210ENST00000620675 PLEKHG2Q9H7P9 1386 aa18.06■□□□□ 0.48
NEK3-210ENST00000620675 DCTN1Q14203 1278 aa18.06■□□□□ 0.48
NEK3-210ENST00000620675 ADAMTS7Q9UKP4 1686 aa18.05■□□□□ 0.48
NEK3-210ENST00000620675 KCNQ2O43526 872 aa18.05■□□□□ 0.48
NEK3-210ENST00000620675 TMPOP42166 694 aaKnown RBP18.05■□□□□ 0.48
NEK3-210ENST00000620675 NFE2L2Q16236 605 aa18.05■□□□□ 0.48
NEK3-210ENST00000620675 AKAP4Q5JQC9 854 aa18.05■□□□□ 0.48
NEK3-210ENST00000620675 GAS2L2Q8NHY3 880 aa18.05■□□□□ 0.48
NEK3-210ENST00000620675 C1orf141Q5JVX7 400 aa18.04■□□□□ 0.48
NEK3-210ENST00000620675 THUMPD2Q9BTF0 503 aaKnown RBP18.04■□□□□ 0.48
NEK3-210ENST00000620675 MAP3K5Q99683 1374 aa18.04■□□□□ 0.48
NEK3-210ENST00000620675 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
NEK3-210ENST00000620675 MCM10Q7L590 875 aa18.03■□□□□ 0.48
NEK3-210ENST00000620675 IL17REQ8NFR9 667 aa18.03■□□□□ 0.48
NEK3-210ENST00000620675 PNNQ9H307 717 aaKnown RBP18.03■□□□□ 0.48
NEK3-210ENST00000620675 SALL2Q9Y467 1007 aaPredicted RBP18.03■□□□□ 0.48
NEK3-210ENST00000620675 BTAF1O14981 1849 aa18.03■□□□□ 0.48
NEK3-210ENST00000620675 RIPK4P57078 832 aa18.03■□□□□ 0.48
NEK3-210ENST00000620675 NHSQ6T4R5 1651 aa18.03■□□□□ 0.48
NEK3-210ENST00000620675 SIPA1L3O60292 1781 aaPredicted RBP18.03■□□□□ 0.48
NEK3-210ENST00000620675 GNAT3A8MTJ3 354 aa18.02■□□□□ 0.48
NEK3-210ENST00000620675 NEFMP07197 916 aa18.02■□□□□ 0.48
NEK3-210ENST00000620675 TRIM35Q9UPQ4 493 aa18.02■□□□□ 0.47
NEK3-210ENST00000620675 TNS1Q9HBL0 1735 aaKnown RBP18.01■□□□□ 0.47
NEK3-210ENST00000620675 PRIM1P49642 420 aaKnown RBP18.01■□□□□ 0.47
NEK3-210ENST00000620675 RNMTO43148 476 aaKnown RBP18■□□□□ 0.47
NEK3-210ENST00000620675 TRIM37O94972 964 aa18■□□□□ 0.47
NEK3-210ENST00000620675 FAM196AQ6ZSG2 479 aa18■□□□□ 0.47
NEK3-210ENST00000620675 SYTL4Q96C24 671 aaPredicted RBP18■□□□□ 0.47
NEK3-210ENST00000620675 DCAF5Q96JK2 942 aa18■□□□□ 0.47
NEK3-210ENST00000620675 BCL9O00512 1426 aa17.99■□□□□ 0.47
NEK3-210ENST00000620675 CEMIPQ8WUJ3 1361 aa17.98■□□□□ 0.47
NEK3-210ENST00000620675 NFATC2IPQ8NCF5 419 aa17.97■□□□□ 0.47
NEK3-210ENST00000620675 PIGBQ92521 554 aa17.97■□□□□ 0.47
NEK3-210ENST00000620675 MRC1P22897 1456 aa17.96■□□□□ 0.47
NEK3-210ENST00000620675 HSP90AB1P08238 724 aaKnown RBP17.96■□□□□ 0.47
NEK3-210ENST00000620675 RTF1Q92541 710 aaKnown RBP17.95■□□□□ 0.46
NEK3-210ENST00000620675 SLC52A2Q9HAB3 445 aa17.94■□□□□ 0.46
NEK3-210ENST00000620675 ERVV-2B6SEH9 535 aa17.94■□□□□ 0.46
NEK3-210ENST00000620675 CABP4P57796 275 aa17.94■□□□□ 0.46
NEK3-210ENST00000620675 MIS18AQ9NYP9 233 aa17.94■□□□□ 0.46
NEK3-210ENST00000620675 TMOD3Q9NYL9 352 aa17.93■□□□□ 0.46
NEK3-210ENST00000620675 PAPPAQ13219 1627 aa17.93■□□□□ 0.46
NEK3-210ENST00000620675 HTATSF1O43719 755 aaKnown RBP17.92■□□□□ 0.46
NEK3-210ENST00000620675 SLC39A6Q13433 755 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms