RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RGS12O14924 1447 aa13.92□□□□□ -0.18
VPS4B-204ENST00000589604 WDR43Q15061 677 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS4B-204ENST00000589604 DISP2A7MBM2 1401 aa13.91□□□□□ -0.18
VPS4B-204ENST00000589604 NCAPD2Q15021 1401 aa13.91□□□□□ -0.18
VPS4B-204ENST00000589604 ONECUT3O60422 494 aaPredicted RBP13.91□□□□□ -0.18
VPS4B-204ENST00000589604 TCP11L2Q8N4U5 519 aa13.91□□□□□ -0.18
VPS4B-204ENST00000589604 CFAP53Q96M91 514 aa13.91□□□□□ -0.18
VPS4B-204ENST00000589604 EP400Q96L91 3159 aa13.91□□□□□ -0.18
VPS4B-204ENST00000589604 BRWD3Q6RI45 1802 aa13.9□□□□□ -0.18
VPS4B-204ENST00000589604 SENP3-EIF4A1A0A087X0R7 540 aa13.89□□□□□ -0.19
VPS4B-204ENST00000589604 IGSF1Q8N6C5 1336 aa13.89□□□□□ -0.19
VPS4B-204ENST00000589604 MEGF6O75095 1541 aa13.89□□□□□ -0.19
VPS4B-204ENST00000589604 BARGINQ6ZT62 677 aa13.88□□□□□ -0.19
VPS4B-204ENST00000589604 AEBP1Q8IUX7 1158 aa13.88□□□□□ -0.19
VPS4B-204ENST00000589604 LRRC37A3O60309 1634 aa13.88□□□□□ -0.19
VPS4B-204ENST00000589604 SEPT12Q8IYM1 358 aa13.88□□□□□ -0.19
VPS4B-204ENST00000589604 PARP4Q9UKK3 1724 aaKnown RBP13.87□□□□□ -0.19
VPS4B-204ENST00000589604 DIAPH1O60610 1272 aaKnown RBP13.87□□□□□ -0.19
VPS4B-204ENST00000589604 THRAP3Q9Y2W1 955 aaKnown RBP13.87□□□□□ -0.19
VPS4B-204ENST00000589604 SHANK3Q9BYB0 1731 aa13.86□□□□□ -0.19
VPS4B-204ENST00000589604 CCDC146Q8IYE0 955 aa13.85□□□□□ -0.19
VPS4B-204ENST00000589604 KDRP35968 1356 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 HMOX1P09601 288 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 IL2RBP14784 551 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 FAM182BQ5T319 152 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 SULT6B1Q6IMI4 303 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 PLEKHF1Q96S99 279 aa13.84□□□□□ -0.19
VPS4B-204ENST00000589604 OVOS2A0A0G2JMS6 1433 aa13.83□□□□□ -0.2
VPS4B-204ENST00000589604 APAF1O14727 1248 aa13.83□□□□□ -0.2
VPS4B-204ENST00000589604 U2SURPO15042 1029 aaKnown RBP13.83□□□□□ -0.2
VPS4B-204ENST00000589604 U2AF1L5P0DN76 240 aaPredicted RBP13.83□□□□□ -0.2
VPS4B-204ENST00000589604 U2AF1Q01081 240 aaKnown RBP eCLIP13.83□□□□□ -0.2
VPS4B-204ENST00000589604 ARXQ96QS3 562 aa13.83□□□□□ -0.2
VPS4B-204ENST00000589604 NUDCQ9Y266 331 aa13.83□□□□□ -0.2
VPS4B-204ENST00000589604 ZNF521Q96K83 1311 aa13.83□□□□□ -0.2
VPS4B-204ENST00000589604 A0A0G2JS52 829 aa13.82□□□□□ -0.2
VPS4B-204ENST00000589604 MYT1Q01538 1121 aa13.82□□□□□ -0.2
VPS4B-204ENST00000589604 RUNDC1Q96C34 613 aa13.82□□□□□ -0.2
VPS4B-204ENST00000589604 PKD1L3Q7Z443 1732 aa13.82□□□□□ -0.2
VPS4B-204ENST00000589604 SALL2Q9Y467 1007 aaPredicted RBP13.82□□□□□ -0.2
VPS4B-204ENST00000589604 TNS2Q63HR2 1409 aa13.81□□□□□ -0.2
VPS4B-204ENST00000589604 MARCH10Q8NA82 808 aaPredicted RBP13.81□□□□□ -0.2
VPS4B-204ENST00000589604 DDB1Q16531 1140 aa13.8□□□□□ -0.2
VPS4B-204ENST00000589604 RSPH6AQ9H0K4 717 aa13.8□□□□□ -0.2
VPS4B-204ENST00000589604 FCHSD2O94868 740 aa13.79□□□□□ -0.2
VPS4B-204ENST00000589604 RAPGEF4Q8WZA2 1011 aa13.79□□□□□ -0.2
VPS4B-204ENST00000589604 CDCA7Q9BWT1 371 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-204ENST00000589604 TATP17735 454 aaPredicted RBP13.79□□□□□ -0.2
VPS4B-204ENST00000589604 KRT27Q7Z3Y8 459 aa13.79□□□□□ -0.2
VPS4B-204ENST00000589604 DLG5Q8TDM6 1919 aa13.78□□□□□ -0.2
VPS4B-204ENST00000589604 EXOC5O00471 708 aa13.78□□□□□ -0.2
VPS4B-204ENST00000589604 NGEFQ8N5V2 710 aa13.78□□□□□ -0.2
VPS4B-204ENST00000589604 ZCRB1Q8TBF4 217 aaKnown RBP13.78□□□□□ -0.2
VPS4B-204ENST00000589604 PHACTR3Q96KR7 559 aa13.78□□□□□ -0.2
VPS4B-204ENST00000589604 CYP27B1O15528 508 aa13.77□□□□□ -0.21
VPS4B-204ENST00000589604 PDE3BQ13370 1112 aa13.77□□□□□ -0.21
VPS4B-204ENST00000589604 CDCA7LQ96GN5 454 aa13.77□□□□□ -0.21
VPS4B-204ENST00000589604 PRKAR2BP31323 418 aa13.76□□□□□ -0.21
VPS4B-204ENST00000589604 DDX54Q8TDD1 881 aaKnown RBP13.76□□□□□ -0.21
VPS4B-204ENST00000589604 PTF1AQ7RTS3 328 aa13.75□□□□□ -0.21
VPS4B-204ENST00000589604 RRP7AQ9Y3A4 280 aaKnown RBP13.75□□□□□ -0.21
VPS4B-204ENST00000589604 TOGARAM1Q9Y4F4 1720 aa13.74□□□□□ -0.21
VPS4B-204ENST00000589604 SLC4A2P04920 1241 aa13.74□□□□□ -0.21
VPS4B-204ENST00000589604 TMPOP42166 694 aaKnown RBP13.74□□□□□ -0.21
VPS4B-204ENST00000589604 CCDC27Q2M243 656 aa13.74□□□□□ -0.21
VPS4B-204ENST00000589604 MTHFSDQ2M296 383 aaKnown RBP13.74□□□□□ -0.21
VPS4B-204ENST00000589604 WWC1Q8IX03 1113 aa13.74□□□□□ -0.21
VPS4B-204ENST00000589604 TRMT2AQ8IZ69 625 aaKnown RBP13.74□□□□□ -0.21
VPS4B-204ENST00000589604 SBF2Q86WG5 1849 aa13.74□□□□□ -0.21
VPS4B-204ENST00000589604 PNNQ9H307 717 aaKnown RBP13.73□□□□□ -0.21
VPS4B-204ENST00000589604 SPINK5Q9NQ38 1064 aaPredicted RBP13.73□□□□□ -0.21
VPS4B-204ENST00000589604 RNF216Q9NWF9 866 aaPredicted RBP13.73□□□□□ -0.21
VPS4B-204ENST00000589604 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.73□□□□□ -0.212e-6■■□□□ 12.4
VPS4B-204ENST00000589604 PCDH11XQ9BZA7 1347 aa13.73□□□□□ -0.21
VPS4B-204ENST00000589604 PCDH11YQ9BZA8 1340 aa13.73□□□□□ -0.21
VPS4B-204ENST00000589604 PHKG2P15735 406 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 TRIM35Q9UPQ4 493 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 PLEKHG2Q9H7P9 1386 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 SLFN5Q08AF3 891 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 PLEKHO1Q53GL0 409 aaPredicted RBP13.72□□□□□ -0.21
VPS4B-204ENST00000589604 ZNF530Q6P9A1 599 aaPredicted RBP13.72□□□□□ -0.21
VPS4B-204ENST00000589604 DOT1LQ8TEK3 1739 aa13.72□□□□□ -0.21
VPS4B-204ENST00000589604 KDM6AO15550 1401 aaPredicted RBP13.71□□□□□ -0.21
VPS4B-204ENST00000589604 KCNQ2O43526 872 aa13.71□□□□□ -0.21
VPS4B-204ENST00000589604 GOLGA2Q08379 1002 aa13.71□□□□□ -0.21
VPS4B-204ENST00000589604 NEUROD2Q15784 382 aa13.71□□□□□ -0.21
VPS4B-204ENST00000589604 DUSP27Q5VZP5 1158 aa13.71□□□□□ -0.21
VPS4B-204ENST00000589604 BCL9O00512 1426 aa13.7□□□□□ -0.22
VPS4B-204ENST00000589604 AMOTQ4VCS5 1084 aa13.7□□□□□ -0.22
VPS4B-204ENST00000589604 ACSBG1Q96GR2 724 aa13.7□□□□□ -0.22
VPS4B-204ENST00000589604 MAPK8IP3Q9UPT6 1336 aa13.7□□□□□ -0.22
VPS4B-204ENST00000589604 TNS1Q9HBL0 1735 aaKnown RBP13.69□□□□□ -0.22
VPS4B-204ENST00000589604 NKX1-1Q15270 411 aaPredicted RBP13.69□□□□□ -0.22
VPS4B-204ENST00000589604 NFE2L2Q16236 605 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 NHSQ6T4R5 1651 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 ADAMTS7Q9UKP4 1686 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 TRIM37O94972 964 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 FAM196AQ6ZSG2 479 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 WDR63Q8IWG1 891 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms