RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 CLIP1P30622 1438 aa11.98□□□□□ -0.49
ATG4D-210ENST00000588972 TROQ12816 1431 aaPredicted RBP11.98□□□□□ -0.49
ATG4D-210ENST00000588972 ELOAQ14241 798 aaKnown RBP11.98□□□□□ -0.49
ATG4D-210ENST00000588972 CDK11AQ9UQ88 783 aaPredicted RBP11.98□□□□□ -0.49
ATG4D-210ENST00000588972 IQSEC2Q5JU85 1478 aa11.97□□□□□ -0.49
ATG4D-210ENST00000588972 ZC3H4Q9UPT8 1303 aaKnown RBP11.97□□□□□ -0.49
ATG4D-210ENST00000588972 EMP3P54852 163 aa11.97□□□□□ -0.49
ATG4D-210ENST00000588972 ILDR2Q71H61 639 aa11.97□□□□□ -0.49
ATG4D-210ENST00000588972 MAP10Q9P2G4 905 aa11.97□□□□□ -0.49
ATG4D-210ENST00000588972 ABCC1P33527 1531 aa11.96□□□□□ -0.49
ATG4D-210ENST00000588972 AGLP35573 1532 aa11.96□□□□□ -0.49
ATG4D-210ENST00000588972 MLH3Q9UHC1 1453 aa11.96□□□□□ -0.49
ATG4D-210ENST00000588972 THAP11Q96EK4 314 aa11.96□□□□□ -0.49
ATG4D-210ENST00000588972 ZMIZ1Q9ULJ6 1067 aa11.96□□□□□ -0.49
ATG4D-210ENST00000588972 PREX2Q70Z35 1606 aa11.96□□□□□ -0.5
ATG4D-210ENST00000588972 CDC42BPBQ9Y5S2 1711 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 USP17L3A6NCW0 530 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 USP17L4A6NCW7 530 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 PTPRNQ16849 979 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 USP17L2Q6R6M4 530 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 SND1Q7KZF4 910 aaKnown RBP eCLIP11.95□□□□□ -0.5
ATG4D-210ENST00000588972 USP17L1Q7RTZ2 530 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 AFAP1Q8N556 730 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 LTBP4Q8N2S1 1624 aa11.95□□□□□ -0.5
ATG4D-210ENST00000588972 ITSN2Q9NZM3 1697 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 LOC105371045A0A1W2PR82 267 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 SKIP12755 728 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 JUNDP17535 347 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 APLP1P51693 650 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 TMEM164Q5U3C3 297 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 PLEKHM2Q8IWE5 1019 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 SCUBE3Q8IX30 993 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 ZNF428Q96B54 188 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 LRRIQ1Q96JM4 1722 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 NCOA1Q15788 1441 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 CNTLNQ9NXG0 1405 aa11.94□□□□□ -0.5
ATG4D-210ENST00000588972 USP17L5A8MUK1 530 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 ST18O60284 1047 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 FMNL1O95466 1100 aaPredicted RBP11.93□□□□□ -0.5
ATG4D-210ENST00000588972 CCDC27Q2M243 656 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 FAM174AQ8TBP5 190 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 STK32AQ8WU08 396 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 MARVELD3Q96A59 401 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 MYT1LQ9UL68 1186 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 GNEQ9Y223 722 aaKnown RBP11.93□□□□□ -0.5
ATG4D-210ENST00000588972 TRAPPC8Q9Y2L5 1435 aa11.93□□□□□ -0.5
ATG4D-210ENST00000588972 MROH2AA6NES4 1674 aa11.92□□□□□ -0.5
ATG4D-210ENST00000588972 FAM205CA6NFA0 338 aa11.92□□□□□ -0.5
ATG4D-210ENST00000588972 RBM25P49756 843 aaKnown RBP11.92□□□□□ -0.5
ATG4D-210ENST00000588972 B4GALNT3Q6L9W6 998 aa11.92□□□□□ -0.5
ATG4D-210ENST00000588972 ADGRD1Q6QNK2 874 aa11.91□□□□□ -0.5
ATG4D-210ENST00000588972 ESF1Q9H501 851 aaKnown RBP11.91□□□□□ -0.5
ATG4D-210ENST00000588972 NOVA2Q9UNW9 492 aaKnown RBP11.91□□□□□ -0.5
ATG4D-210ENST00000588972 KIDINS220Q9ULH0 1771 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 NR1I2O75469 434 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 PPP4CP60510 307 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 NPATQ14207 1427 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 CEP162Q5TB80 1403 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 ANKK1Q8NFD2 765 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 HPS5Q9UPZ3 1129 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 PCDHB3Q9Y5E6 796 aa11.9□□□□□ -0.5
ATG4D-210ENST00000588972 CCDC18Q5T9S5 1454 aa11.89□□□□□ -0.51
ATG4D-210ENST00000588972 HRO43593 1189 aa11.89□□□□□ -0.51
ATG4D-210ENST00000588972 CTHP32929 405 aa11.89□□□□□ -0.51
ATG4D-210ENST00000588972 DEPDC4Q8N2C3 294 aa11.89□□□□□ -0.51
ATG4D-210ENST00000588972 CAMSAP1Q5T5Y3 1602 aa11.89□□□□□ -0.51
ATG4D-210ENST00000588972 ZNF142P52746 1687 aaPredicted RBP11.88□□□□□ -0.51
ATG4D-210ENST00000588972 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
ATG4D-210ENST00000588972 FAM196BA6NMK8 535 aa11.88□□□□□ -0.51
ATG4D-210ENST00000588972 CEP126Q9P2H0 1117 aa11.88□□□□□ -0.51
ATG4D-210ENST00000588972 GPSM3Q9Y4H4 160 aa11.88□□□□□ -0.51
ATG4D-210ENST00000588972 CDC42BPAQ5VT25 1732 aa11.88□□□□□ -0.51
ATG4D-210ENST00000588972 MKRN1Q9UHC7 482 aaKnown RBP11.87□□□□□ -0.51
ATG4D-210ENST00000588972 SAMD9LQ8IVG5 1584 aa11.87□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L15C9J2P7 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L10C9JJH3 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L13C9JLJ4 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L12C9JPN9 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L11C9JVI0 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L21D6R901 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L18D6R9N7 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L22D6RA61 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L17D6RBQ6 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L19D6RCP7 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L20D6RJB6 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 CCNYL3P0C7X3 344 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 BCAMP50895 628 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 LSM11P83369 360 aaKnown RBP eCLIP11.86□□□□□ -0.512e-15■□□□□ 8.5
ATG4D-210ENST00000588972 PTK2Q05397 1052 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 USP17L24Q0WX57 530 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 MSS51Q4VC12 460 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 CRTC2Q53ET0 693 aaPredicted RBP11.86□□□□□ -0.51
ATG4D-210ENST00000588972 PHLDB3Q6NSJ2 640 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 PDXDC2PQ6P474 469 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 OCSTAMPQ9BR26 566 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 EVA1BQ9NVM1 165 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 TSR3Q9UJK0 312 aaKnown RBP11.86□□□□□ -0.51
ATG4D-210ENST00000588972 MYO3AQ8NEV4 1616 aa11.86□□□□□ -0.51
ATG4D-210ENST00000588972 POTEB3A0JP26 581 aa11.85□□□□□ -0.51
ATG4D-210ENST00000588972 SLFNL1Q499Z3 407 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms