RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FAM161AQ3B820 660 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 HIRIP3Q9BW71 556 aaPredicted RBP7.42□□□□□ -1.22
LIG3-210ENST00000588109 TRAK1Q9UPV9 953 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 TBX22Q9Y458 520 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 YTHDC2Q9H6S0 1430 aaKnown RBP7.42□□□□□ -1.22
LIG3-210ENST00000588109 MED14O60244 1454 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 ASXL1Q8IXJ9 1541 aa7.42□□□□□ -1.22
LIG3-210ENST00000588109 ZMYND10O75800 440 aa7.41□□□□□ -1.22
LIG3-210ENST00000588109 BARGINQ6ZT62 677 aa7.41□□□□□ -1.22
LIG3-210ENST00000588109 LRCH3Q96II8 777 aa7.41□□□□□ -1.22
LIG3-210ENST00000588109 METP08581 1390 aa7.41□□□□□ -1.22
LIG3-210ENST00000588109 ST20-MTHFSA0A0A6YYL1 179 aa7.4□□□□□ -1.22
LIG3-210ENST00000588109 IRF6O14896 467 aa7.4□□□□□ -1.22
LIG3-210ENST00000588109 DNAJB2P25686 324 aa7.4□□□□□ -1.22
LIG3-210ENST00000588109 EYA1Q99502 592 aa7.4□□□□□ -1.22
LIG3-210ENST00000588109 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.4□□□□□ -1.22
LIG3-210ENST00000588109 POGKQ9P215 609 aa7.4□□□□□ -1.22
LIG3-210ENST00000588109 LRPPRCP42704 1394 aaKnown RBP7.4□□□□□ -1.22
LIG3-210ENST00000588109 STRCQ7RTU9 1775 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 ARHGEF28Q8N1W1 1705 aaKnown RBP7.39□□□□□ -1.23
LIG3-210ENST00000588109 PIK3R4Q99570 1358 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 CENPJQ9HC77 1338 aaPredicted RBP7.39□□□□□ -1.23
LIG3-210ENST00000588109 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.39□□□□□ -1.23
LIG3-210ENST00000588109 C3orf80F5H4A9 247 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 RNF40O75150 1001 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 PTPN5P54829 565 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 SAMD7Q7Z3H4 446 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 PXYLP1Q8TE99 480 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 PRAM1Q96QH2 718 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 AMOTL2Q9Y2J4 779 aa7.39□□□□□ -1.23
LIG3-210ENST00000588109 KNDC1Q76NI1 1749 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 ABCC11Q96J66 1382 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 RCCD1A6NED2 376 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 SAFB2Q14151 953 aaKnown RBP eCLIP7.38□□□□□ -1.23
LIG3-210ENST00000588109 METTL3Q86U44 580 aaKnown RBP7.38□□□□□ -1.23
LIG3-210ENST00000588109 POLR3GLQ9BT43 218 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 HCSTQ9UBK5 93 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 DAXXQ9UER7 740 aaPredicted RBP7.38□□□□□ -1.23
LIG3-210ENST00000588109 QRICH2Q9H0J4 1663 aa7.38□□□□□ -1.23
LIG3-210ENST00000588109 DLC1Q96QB1 1528 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 TECPR2O15040 1411 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 PTPRUQ92729 1446 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 SOWAHBA6NEL2 793 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 PPP4CP60510 307 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 TMF1P82094 1093 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 WAPLQ7Z5K2 1190 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 NECTIN2Q92692 538 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 CPS1P31327 1500 aa7.37□□□□□ -1.23
LIG3-210ENST00000588109 FAM135BQ49AJ0 1406 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 CHD2O14647 1828 aaKnown RBP7.36□□□□□ -1.23
LIG3-210ENST00000588109 ROBO2Q9HCK4 1378 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 XRN1Q8IZH2 1706 aaKnown RBP7.36□□□□□ -1.23
LIG3-210ENST00000588109 KCNA6P17658 529 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 BCAMP50895 628 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 SWT1Q5T5J6 900 aaKnown RBP7.36□□□□□ -1.23
LIG3-210ENST00000588109 THSD4Q6ZMP0 1018 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 SLF2Q8IX21 1173 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 CCDC102AQ96A19 550 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 AK7Q96M32 723 aa7.36□□□□□ -1.23
LIG3-210ENST00000588109 PTCH1Q13635 1447 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 PLEKHH1Q9ULM0 1364 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 NWD1Q149M9 1564 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 CDCA8Q53HL2 280 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 C14orf37Q86TY3 774 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 SIRT1Q96EB6 747 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 TESK2Q96S53 571 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 TMEM134Q9H6X4 195 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 HPS5Q9UPZ3 1129 aa7.35□□□□□ -1.23
LIG3-210ENST00000588109 SBNO2Q9Y2G9 1366 aa7.34□□□□□ -1.23
LIG3-210ENST00000588109 EVC2Q86UK5 1308 aa7.34□□□□□ -1.23
LIG3-210ENST00000588109 SRPK2P78362 688 aaKnown RBP7.34□□□□□ -1.23
LIG3-210ENST00000588109 TPRNQ4KMQ1 711 aa7.34□□□□□ -1.23
LIG3-210ENST00000588109 PROSER2Q86WR7 435 aaPredicted RBP7.34□□□□□ -1.23
LIG3-210ENST00000588109 TSR3Q9UJK0 312 aaKnown RBP7.34□□□□□ -1.23
LIG3-210ENST00000588109 NKTRP30414 1462 aaKnown RBP7.34□□□□□ -1.23
LIG3-210ENST00000588109 CCDC7Q96M83 1385 aa7.33□□□□□ -1.24
LIG3-210ENST00000588109 DISP3Q9P2K9 1392 aa7.33□□□□□ -1.24
LIG3-210ENST00000588109 KIF7Q2M1P5 1343 aa7.33□□□□□ -1.24
LIG3-210ENST00000588109 WASHC2AQ641Q2 1341 aa7.33□□□□□ -1.24
LIG3-210ENST00000588109 PRKCSHP14314 528 aaPredicted RBP7.33□□□□□ -1.24
LIG3-210ENST00000588109 SLC24A3Q9HC58 644 aa7.33□□□□□ -1.24
LIG3-210ENST00000588109 ZNF335Q9H4Z2 1342 aaPredicted RBP7.32□□□□□ -1.24
LIG3-210ENST00000588109 C11orf95C9JLR9 678 aaPredicted RBP7.32□□□□□ -1.24
LIG3-210ENST00000588109 MDM2Q00987 491 aaPredicted RBP7.32□□□□□ -1.24
LIG3-210ENST00000588109 SULF1Q8IWU6 871 aa7.32□□□□□ -1.24
LIG3-210ENST00000588109 CDK19Q9BWU1 502 aa7.32□□□□□ -1.24
LIG3-210ENST00000588109 TULP4Q9NRJ4 1543 aa7.32□□□□□ -1.24
LIG3-210ENST00000588109 STRCP1A6NGW2 1772 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 WASLO00401 505 aaPredicted RBP7.31□□□□□ -1.24
LIG3-210ENST00000588109 CLCN1P35523 988 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 DDX10Q13206 875 aaKnown RBP7.31□□□□□ -1.24
LIG3-210ENST00000588109 TTLL12Q14166 644 aaPredicted RBP7.31□□□□□ -1.24
LIG3-210ENST00000588109 NYAP1Q6ZVC0 841 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 RDH13Q8NBN7 331 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 TMC1Q8TDI8 760 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 NLRP7Q8WX94 980 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 WBP1LQ9NX94 342 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.31□□□□□ -1.24
LIG3-210ENST00000588109 TMEM94Q12767 1356 aa7.31□□□□□ -1.24
LIG3-210ENST00000588109 NALCNQ8IZF0 1738 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms