RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 LRP5O75197 1615 aa16.85■□□□□ 0.29
VMP1-202ENST00000585847 SHANK3Q9BYB0 1731 aa16.84■□□□□ 0.29
VMP1-202ENST00000585847 PNISRQ8TF01 805 aaKnown RBP16.84■□□□□ 0.29
VMP1-202ENST00000585847 KDRP35968 1356 aa16.84■□□□□ 0.29
VMP1-202ENST00000585847 LRRC37A3O60309 1634 aa16.83■□□□□ 0.28
VMP1-202ENST00000585847 PSDA5PKW4 1024 aaPredicted RBP16.82■□□□□ 0.28
VMP1-202ENST00000585847 NGEFQ8N5V2 710 aa16.82■□□□□ 0.28
VMP1-202ENST00000585847 SULT6B1Q6IMI4 303 aa16.81■□□□□ 0.28
VMP1-202ENST00000585847 PKD1L3Q7Z443 1732 aa16.81■□□□□ 0.28
VMP1-202ENST00000585847 OVOS2A0A0G2JMS6 1433 aa16.8■□□□□ 0.28
VMP1-202ENST00000585847 HMOX1P09601 288 aa16.8■□□□□ 0.28
VMP1-202ENST00000585847 IL2RBP14784 551 aa16.8■□□□□ 0.28
VMP1-202ENST00000585847 U2SURPO15042 1029 aaKnown RBP16.79■□□□□ 0.28
VMP1-202ENST00000585847 RSPH6AQ9H0K4 717 aa16.79■□□□□ 0.28
VMP1-202ENST00000585847 WDR43Q15061 677 aaKnown RBP eCLIP16.78■□□□□ 0.28
VMP1-202ENST00000585847 EN1Q05925 392 aaPredicted RBP16.77■□□□□ 0.28
VMP1-202ENST00000585847 FAM182BQ5T319 152 aa16.77■□□□□ 0.28
VMP1-202ENST00000585847 NUDCQ9Y266 331 aa16.77■□□□□ 0.28
VMP1-202ENST00000585847 TNS2Q63HR2 1409 aa16.77■□□□□ 0.27
VMP1-202ENST00000585847 U2AF1L5P0DN76 240 aaPredicted RBP16.76■□□□□ 0.27
VMP1-202ENST00000585847 U2AF1Q01081 240 aaKnown RBP eCLIP16.76■□□□□ 0.27
VMP1-202ENST00000585847 CDCA7Q9BWT1 371 aaPredicted RBP16.76■□□□□ 0.27
VMP1-202ENST00000585847 ZBED9Q6R2W3 1325 aa16.75■□□□□ 0.27
VMP1-202ENST00000585847 TATP17735 454 aaPredicted RBP16.75■□□□□ 0.27
VMP1-202ENST00000585847 RAPGEF4Q8WZA2 1011 aa16.75■□□□□ 0.27
VMP1-202ENST00000585847 PLEKHF1Q96S99 279 aa16.75■□□□□ 0.27
VMP1-202ENST00000585847 ADAMTS8Q9UP79 889 aa16.75■□□□□ 0.27
VMP1-202ENST00000585847 NCBP3Q53F19 620 aaKnown RBP16.74■□□□□ 0.27
VMP1-202ENST00000585847 FAM9BQ8IZU0 186 aa16.74■□□□□ 0.27
VMP1-202ENST00000585847 YTHDC1Q96MU7 727 aaKnown RBP16.74■□□□□ 0.27
VMP1-202ENST00000585847 PLEKHG2Q9H7P9 1386 aa16.74■□□□□ 0.27
VMP1-202ENST00000585847 FCHSD2O94868 740 aa16.73■□□□□ 0.27
VMP1-202ENST00000585847 PRKAR2BP31323 418 aa16.73■□□□□ 0.27
VMP1-202ENST00000585847 R3HDM1Q15032 1099 aaKnown RBP16.73■□□□□ 0.27
VMP1-202ENST00000585847 PHACTR3Q96KR7 559 aa16.73■□□□□ 0.27
VMP1-202ENST00000585847 PNNQ9H307 717 aaKnown RBP16.73■□□□□ 0.27
VMP1-202ENST00000585847 CYP27B1O15528 508 aa16.72■□□□□ 0.27
VMP1-202ENST00000585847 DDB1Q16531 1140 aa16.72■□□□□ 0.27
VMP1-202ENST00000585847 MARCH10Q8NA82 808 aaPredicted RBP16.72■□□□□ 0.27
VMP1-202ENST00000585847 ZCRB1Q8TBF4 217 aaKnown RBP16.72■□□□□ 0.27
VMP1-202ENST00000585847 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.72■□□□□ 0.279e-10■■□□□ 12.9
VMP1-202ENST00000585847 TNS1Q9HBL0 1735 aaKnown RBP16.72■□□□□ 0.27
VMP1-202ENST00000585847 EXOC5O00471 708 aa16.71■□□□□ 0.27
VMP1-202ENST00000585847 HNRNPUQ00839 825 aaKnown RBP eCLIP16.71■□□□□ 0.27
VMP1-202ENST00000585847 MTHFSDQ2M296 383 aaKnown RBP16.7■□□□□ 0.26
VMP1-202ENST00000585847 FAM196AQ6ZSG2 479 aa16.7■□□□□ 0.26
VMP1-202ENST00000585847 DLG5Q8TDM6 1919 aa16.7■□□□□ 0.26
VMP1-202ENST00000585847 VIRMAQ69YN4 1812 aaKnown RBP16.7■□□□□ 0.26
VMP1-202ENST00000585847 SBF2Q86WG5 1849 aa16.7■□□□□ 0.26
VMP1-202ENST00000585847 EZH2Q15910 746 aaKnown RBP16.69■□□□□ 0.26
VMP1-202ENST00000585847 TOGARAM1Q9Y4F4 1720 aa16.69■□□□□ 0.26
VMP1-202ENST00000585847 TRIM37O94972 964 aa16.68■□□□□ 0.26
VMP1-202ENST00000585847 PLEKHO1Q53GL0 409 aaPredicted RBP16.68■□□□□ 0.26
VMP1-202ENST00000585847 ADAMTS7Q9UKP4 1686 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 APBA3O96018 575 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 PHKG2P15735 406 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 PDE3BQ13370 1112 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 AMOTQ4VCS5 1084 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 CCDC146Q8IYE0 955 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 DDX54Q8TDD1 881 aaKnown RBP16.67■□□□□ 0.26
VMP1-202ENST00000585847 SPG7Q9UQ90 795 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 BCL9O00512 1426 aa16.67■□□□□ 0.26
VMP1-202ENST00000585847 NKX1-1Q15270 411 aaPredicted RBP16.66■□□□□ 0.26
VMP1-202ENST00000585847 PCDH11XQ9BZA7 1347 aa16.66■□□□□ 0.26
VMP1-202ENST00000585847 PCDH11YQ9BZA8 1340 aa16.66■□□□□ 0.26
VMP1-202ENST00000585847 KDM6AO15550 1401 aaPredicted RBP16.65■□□□□ 0.26
VMP1-202ENST00000585847 SCN11AQ9UI33 1791 aa16.65■□□□□ 0.26
VMP1-202ENST00000585847 ZNF530Q6P9A1 599 aaPredicted RBP16.65■□□□□ 0.26
VMP1-202ENST00000585847 DOT1LQ8TEK3 1739 aa16.65■□□□□ 0.26
VMP1-202ENST00000585847 ITGB4P16144 1822 aa16.64■□□□□ 0.25
VMP1-202ENST00000585847 IFNL2Q8IZJ0 200 aa16.64■□□□□ 0.25
VMP1-202ENST00000585847 RUNDC1Q96C34 613 aa16.64■□□□□ 0.25
VMP1-202ENST00000585847 CAMKK2Q96RR4 588 aa16.64■□□□□ 0.25
VMP1-202ENST00000585847 KAT6BQ8WYB5 2073 aa16.62■□□□□ 0.25
VMP1-202ENST00000585847 AKAP4Q5JQC9 854 aa16.62■□□□□ 0.25
VMP1-202ENST00000585847 PTF1AQ7RTS3 328 aa16.62■□□□□ 0.25
VMP1-202ENST00000585847 GAS2L2Q8NHY3 880 aa16.62■□□□□ 0.25
VMP1-202ENST00000585847 NHSQ6T4R5 1651 aa16.62■□□□□ 0.25
VMP1-202ENST00000585847 TMPOP42166 694 aaKnown RBP16.61■□□□□ 0.25
VMP1-202ENST00000585847 NFE2L2Q16236 605 aa16.61■□□□□ 0.25
VMP1-202ENST00000585847 NBPF14Q5TI25 921 aa16.61■□□□□ 0.25
VMP1-202ENST00000585847 LGR6Q9HBX8 967 aa16.61■□□□□ 0.25
VMP1-202ENST00000585847 NEFMP07197 916 aa16.6■□□□□ 0.25
VMP1-202ENST00000585847 IL17REQ8NFR9 667 aa16.6■□□□□ 0.25
VMP1-202ENST00000585847 MAP3K5Q99683 1374 aa16.6■□□□□ 0.25
VMP1-202ENST00000585847 RREB1Q92766 1687 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 SIPA1L3O60292 1781 aaPredicted RBP16.59■□□□□ 0.25
VMP1-202ENST00000585847 APAF1O14727 1248 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 RNMTO43148 476 aaKnown RBP16.59■□□□□ 0.25
VMP1-202ENST00000585847 KCNQ2O43526 872 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 MPRIPQ6WCQ1 1025 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 ACSBG1Q96GR2 724 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 RRP7AQ9Y3A4 280 aaKnown RBP16.59■□□□□ 0.25
VMP1-202ENST00000585847 MRC1P22897 1456 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 NUP188Q5SRE5 1749 aa16.59■□□□□ 0.25
VMP1-202ENST00000585847 SENP3-EIF4A1A0A087X0R7 540 aa16.58■□□□□ 0.24
VMP1-202ENST00000585847 GNAT3A8MTJ3 354 aa16.58■□□□□ 0.24
VMP1-202ENST00000585847 C1orf141Q5JVX7 400 aa16.58■□□□□ 0.24
VMP1-202ENST00000585847 TRIM35Q9UPQ4 493 aa16.58■□□□□ 0.24
VMP1-202ENST00000585847 MAPK8IP3Q9UPT6 1336 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms