RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 TTLL12Q14166 644 aaPredicted RBP9.28□□□□□ -0.92
SMCHD1-209ENST00000583441 DOC2BQ14184 412 aa9.28□□□□□ -0.92
SMCHD1-209ENST00000583441 PIK3R2O00459 728 aa9.27□□□□□ -0.93
SMCHD1-209ENST00000583441 GAS2L1Q99501 681 aaPredicted RBP9.27□□□□□ -0.93
SMCHD1-209ENST00000583441 ARHGAP9Q9BRR9 750 aa9.27□□□□□ -0.93
SMCHD1-209ENST00000583441 TULP1O00294 542 aaPredicted RBP9.26□□□□□ -0.93
SMCHD1-209ENST00000583441 CSPP1Q1MSJ5 1256 aa9.26□□□□□ -0.93
SMCHD1-209ENST00000583441 SUV39H2Q9H5I1 410 aa9.26□□□□□ -0.93
SMCHD1-209ENST00000583441 KDM2AQ9Y2K7 1162 aa9.26□□□□□ -0.93
SMCHD1-209ENST00000583441 TMPRSS4Q9NRS4 437 aa9.25□□□□□ -0.93
SMCHD1-209ENST00000583441 RNF144AP50876 292 aaPredicted RBP9.24□□□□□ -0.93
SMCHD1-209ENST00000583441 ZBTB33Q86T24 672 aa9.24□□□□□ -0.93
SMCHD1-209ENST00000583441 NBPF11Q86T75 865 aa9.24□□□□□ -0.93
SMCHD1-209ENST00000583441 EDARADDQ8WWZ3 215 aa9.24□□□□□ -0.93
SMCHD1-209ENST00000583441 DYRK1BQ9Y463 629 aa9.24□□□□□ -0.93
SMCHD1-209ENST00000583441 NUTM2BA6NNL0 878 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 NUTM2EB1AL46 878 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 AMPD1P23109 780 aa9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 CHRNA4P43681 627 aa9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 NUTM2DQ5VT03 806 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 RIC3Q7Z5B4 369 aa9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 NUTM2AQ8IVF1 878 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 ZNF784Q8NCA9 323 aaPredicted RBP9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 ZFP64Q9NPA5 681 aa9.23□□□□□ -0.93
SMCHD1-209ENST00000583441 ADD1P35611 737 aaKnown RBP9.22□□□□□ -0.93
SMCHD1-209ENST00000583441 PDXDC2PQ6P474 469 aa9.22□□□□□ -0.93
SMCHD1-209ENST00000583441 LINC00114Q6XXX2 140 aa9.22□□□□□ -0.93
SMCHD1-209ENST00000583441 GOLGA2P5Q9HBQ8 144 aa9.22□□□□□ -0.93
SMCHD1-209ENST00000583441 GDF2Q9UK05 429 aaPredicted RBP9.22□□□□□ -0.93
SMCHD1-209ENST00000583441 GNB5O14775 395 aa9.21□□□□□ -0.94
SMCHD1-209ENST00000583441 C1orf229Q6ZS94 237 aaPredicted RBP9.21□□□□□ -0.94
SMCHD1-209ENST00000583441 KDF1Q8NAX2 398 aaPredicted RBP9.21□□□□□ -0.94
SMCHD1-209ENST00000583441 HELBQ8NG08 1087 aaPredicted RBP9.21□□□□□ -0.94
SMCHD1-209ENST00000583441 RAB15P59190 212 aa9.2□□□□□ -0.94
SMCHD1-209ENST00000583441 GIGYF2Q6Y7W6 1299 aaKnown RBP9.2□□□□□ -0.94
SMCHD1-209ENST00000583441 KRTAP19-1Q8IUB9 90 aa9.2□□□□□ -0.94
SMCHD1-209ENST00000583441 KLRG1Q96E93 195 aa9.2□□□□□ -0.94
SMCHD1-209ENST00000583441 ARTNQ5T4W7 220 aa9.19□□□□□ -0.94
SMCHD1-209ENST00000583441 NUCKS1Q9H1E3 243 aaKnown RBP9.19□□□□□ -0.94
SMCHD1-209ENST00000583441 NOP53Q9NZM5 478 aaKnown RBP9.19□□□□□ -0.94
SMCHD1-209ENST00000583441 LILRA1O75019 489 aa9.18□□□□□ -0.94
SMCHD1-209ENST00000583441 GATA4P43694 442 aa9.17□□□□□ -0.94
SMCHD1-209ENST00000583441 GOLGA6L1Q8N7Z2 621 aa9.17□□□□□ -0.94
SMCHD1-209ENST00000583441 CFHR5Q9BXR6 569 aa9.17□□□□□ -0.94
SMCHD1-209ENST00000583441 GPC1P35052 558 aa9.16□□□□□ -0.94
SMCHD1-209ENST00000583441 POU4F2Q12837 409 aa9.16□□□□□ -0.94
SMCHD1-209ENST00000583441 NBPF20Q3BBV1 942 aa9.16□□□□□ -0.94
SMCHD1-209ENST00000583441 FOXD4L6Q3SYB3 417 aaPredicted RBP9.16□□□□□ -0.94
SMCHD1-209ENST00000583441 FOXD4L3Q6VB84 417 aaPredicted RBP9.16□□□□□ -0.94
SMCHD1-209ENST00000583441 PHF24Q9UPV7 400 aa9.15□□□□□ -0.94
SMCHD1-209ENST00000583441 ERVH48-1M5A8F1 160 aa9.14□□□□□ -0.95
SMCHD1-209ENST00000583441 MEN1O00255 615 aa9.14□□□□□ -0.95
SMCHD1-209ENST00000583441 HOXB4P17483 251 aaPredicted RBP9.14□□□□□ -0.95
SMCHD1-209ENST00000583441 QPCTQ16769 361 aa9.13□□□□□ -0.95
SMCHD1-209ENST00000583441 SLC27A3Q5K4L6 730 aa9.13□□□□□ -0.95
SMCHD1-209ENST00000583441 TRIM52Q96A61 297 aa9.13□□□□□ -0.95
SMCHD1-209ENST00000583441 AMHR2Q16671 573 aa9.12□□□□□ -0.95
SMCHD1-209ENST00000583441 FKBPLQ9UIM3 349 aa9.12□□□□□ -0.95
SMCHD1-209ENST00000583441 F11P03951 625 aa9.11□□□□□ -0.95
SMCHD1-209ENST00000583441 PTK2Q05397 1052 aa9.11□□□□□ -0.95
SMCHD1-209ENST00000583441 RSPO4Q2I0M5 234 aaPredicted RBP9.11□□□□□ -0.95
SMCHD1-209ENST00000583441 ATP5J2-PTCD1G3V325 749 aa9.1□□□□□ -0.95
SMCHD1-209ENST00000583441 LILRB3O75022 631 aa9.1□□□□□ -0.95
SMCHD1-209ENST00000583441 BTBD6Q96KE9 485 aa9.1□□□□□ -0.95
SMCHD1-209ENST00000583441 TIMMDC1Q9NPL8 285 aa9.1□□□□□ -0.95
SMCHD1-209ENST00000583441 CYLDQ9NQC7 956 aa9.1□□□□□ -0.95
SMCHD1-209ENST00000583441 NBPF10Q6P3W6 841 aaKnown RBP9.09□□□□□ -0.95
SMCHD1-209ENST00000583441 NBPF15Q8N660 670 aa9.09□□□□□ -0.95
SMCHD1-209ENST00000583441 LIMD1Q9UGP4 676 aa9.09□□□□□ -0.95
SMCHD1-209ENST00000583441 SLCO4C1Q6ZQN7 724 aa9.08□□□□□ -0.96
SMCHD1-209ENST00000583441 ADAM32Q8TC27 787 aa9.08□□□□□ -0.96
SMCHD1-209ENST00000583441 NLRP3Q96P20 1036 aa9.08□□□□□ -0.96
SMCHD1-209ENST00000583441 BMP4P12644 408 aa9.07□□□□□ -0.96
SMCHD1-209ENST00000583441 RTL5Q5HYW3 569 aaPredicted RBP9.07□□□□□ -0.96
SMCHD1-209ENST00000583441 WDR44Q5JSH3 913 aa9.07□□□□□ -0.96
SMCHD1-209ENST00000583441 GGA1Q9UJY5 639 aa9.07□□□□□ -0.96
SMCHD1-209ENST00000583441 ZC3H4Q9UPT8 1303 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-209ENST00000583441 TUSC1Q2TAM9 212 aa9.06□□□□□ -0.96
SMCHD1-209ENST00000583441 NKAPLQ5M9Q1 402 aa9.06□□□□□ -0.96
SMCHD1-209ENST00000583441 DZIP3Q86Y13 1208 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-209ENST00000583441 A0A1W2PRU2 124 aa9.05□□□□□ -0.96
SMCHD1-209ENST00000583441 DGKGP49619 791 aa9.05□□□□□ -0.96
SMCHD1-209ENST00000583441 COBLO75128 1261 aa9.04□□□□□ -0.96
SMCHD1-209ENST00000583441 OCSTAMPQ9BR26 566 aa9.04□□□□□ -0.96
SMCHD1-209ENST00000583441 GRIP2Q9C0E4 1043 aa9.04□□□□□ -0.96
SMCHD1-209ENST00000583441 GPSM3Q9Y4H4 160 aa9.04□□□□□ -0.96
SMCHD1-209ENST00000583441 DYRK3O43781 588 aa9.03□□□□□ -0.96
SMCHD1-209ENST00000583441 EPXP11678 715 aa9.03□□□□□ -0.96
SMCHD1-209ENST00000583441 PLCB2Q00722 1185 aa9.03□□□□□ -0.96
SMCHD1-209ENST00000583441 TAS1R3Q7RTX0 852 aa9.03□□□□□ -0.96
SMCHD1-209ENST00000583441 SPATA31C2B4DYI2 1134 aa9.02□□□□□ -0.97
SMCHD1-209ENST00000583441 WASLO00401 505 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-209ENST00000583441 CTDSPL2Q05D32 466 aa9.02□□□□□ -0.97
SMCHD1-209ENST00000583441 KRTAP4-7Q9BYR0 210 aa9.02□□□□□ -0.97
SMCHD1-209ENST00000583441 GPAMQ9HCL2 828 aa9.02□□□□□ -0.97
SMCHD1-209ENST00000583441 ESPNB1AK53 854 aa9.01□□□□□ -0.97
SMCHD1-209ENST00000583441 THBS1P07996 1170 aa9.01□□□□□ -0.97
SMCHD1-209ENST00000583441 MYSM1Q5VVJ2 828 aa9.01□□□□□ -0.97
SMCHD1-209ENST00000583441 PPP2R2DQ66LE6 453 aa9.01□□□□□ -0.97
SMCHD1-209ENST00000583441 TPSG1Q9NRR2 321 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms