RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	MRPL50	Q8N5N7	158 aa	Known RBP	3.15	□□□□□ -1.91
CHD3-217	ENST00000574022	PCDHB3	Q9Y5E6	796 aa		3.15	□□□□□ -1.91
CHD3-217	ENST00000574022	CADPS	Q9ULU8	1353 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	MAGEB6P1	A0A0J9YX57	407 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022		M0R2N6	131 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	P4HB	P07237	508 aa	Known RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	PBX2	P40425	430 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	MMP16	P51512	607 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	APLP1	P51693	650 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	FGD1	P98174	961 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	HDLBP	Q00341	1268 aa	Known RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	FKBP5	Q13451	457 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	NAA30	Q147X3	362 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	MSS51	Q4VC12	460 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	POTEE	Q6S8J3	1075 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	SH3BP5L	Q7L8J4	393 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	FAM160A2	Q8N612	972 aa	Predicted RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	TSEN2	Q8NCE0	465 aa	Known RBP	3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	TMC1	Q8TDI8	760 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	COL26A1	Q96A83	441 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	SPSB2	Q99619	263 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	CARD14	Q9BXL6	1004 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	RBCK1	Q9BYM8	510 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	PCDHB11	Q9Y5F2	797 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	ERBB3	P21860	1342 aa		3.14	□□□□□ -1.91
CHD3-217	ENST00000574022	NDUFB5	O43674	189 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	NPR3	P17342	541 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	NCL	P19338	710 aa	Known RBP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	ITGAE	P38570	1179 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	XPC	Q01831	940 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	PLCB3	Q01970	1234 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	AAMP	Q13685	434 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	MRPL58	Q14197	206 aa	Known RBP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	AGER	Q15109	404 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	VARS2	Q5ST30	1063 aa	Known RBP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	TMC7	Q7Z402	723 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	BPHL	Q86WA6	291 aa	Predicted RBP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	CCDC24	Q8N4L8	307 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	TMEM87A	Q8NBN3	555 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	HELQ	Q8TDG4	1101 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	PIK3R5	Q8WYR1	880 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	UNC93B1	Q9H1C4	597 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	BRPF3	Q9ULD4	1205 aa		3.13	□□□□□ -1.91
CHD3-217	ENST00000574022	GOLGA8CP	A6NN73	597 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	POTEB2	H3BUK9	544 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	TK2	O00142	265 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	TREH	O43280	583 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	MYC	P01106	439 aa	Predicted RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	LDHB	P07195	334 aa	Known RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	IGFBP4	P22692	258 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	NBPF20	Q3BBV1	942 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	ERFE	Q4G0M1	354 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	PTCRA	Q6ISU1	281 aa	Predicted RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	DPH6	Q7L8W6	267 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	SH3RF1	Q7Z6J0	888 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	ANKK1	Q8NFD2	765 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	GAS2L2	Q8NHY3	880 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	VTI1A	Q96AJ9	217 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	STAC3	Q96MF2	364 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	PURB	Q96QR8	312 aa	Known RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	CITED4	Q96RK1	184 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	TANGO6	Q9C0B7	1094 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	ESF1	Q9H501	851 aa	Known RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	MRS2	Q9HD23	443 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	PARP2	Q9UGN5	583 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	TSR3	Q9UJK0	312 aa	Known RBP	3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	HPS5	Q9UPZ3	1129 aa		3.12	□□□□□ -1.91
CHD3-217	ENST00000574022	SOWAHB	A6NEL2	793 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	ESPN	B1AK53	854 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	BACH1	O14867	736 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	FOXO3	O43524	673 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	SORBS3	O60504	671 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	PRPF40A	O75400	957 aa	Known RBP	3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	MPST	P25325	297 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	MAPK8	P45983	427 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	FMR1	Q06787	632 aa	Known RBP eCLIP	3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	RAD51AP2	Q09MP3	1159 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	LDLRAD1	Q5T700	205 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	ALKBH2	Q6NS38	261 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	GIMAP6	Q6P9H5	292 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	POTEH	Q6S545	545 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	NT5DC4	Q86YG4	428 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	SEPT12	Q8IYM1	358 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	SCG3	Q8WXD2	468 aa	Known RBP	3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	BAP1	Q92560	729 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	RNF34	Q969K3	372 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	SLC10A4	Q96EP9	437 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	FAM161B	Q96MY7	647 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	DUSP9	Q99956	384 aa	Known RBP	3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	PRDM9	Q9NQV7	894 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	ZNF358	Q9NW07	568 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	ATAD2	Q6PL18	1390 aa		3.11	□□□□□ -1.91
CHD3-217	ENST00000574022	ANKRD62	A6NC57	917 aa		3.1	□□□□□ -1.91
CHD3-217	ENST00000574022	ATP2B1	P20020	1258 aa		3.1	□□□□□ -1.91
CHD3-217	ENST00000574022	RAB15	P59190	212 aa		3.1	□□□□□ -1.91
CHD3-217	ENST00000574022	COPS2	P61201	443 aa		3.1	□□□□□ -1.91
CHD3-217	ENST00000574022	DAB2	P98082	770 aa		3.1	□□□□□ -1.91
CHD3-217	ENST00000574022	ATP2B2	Q01814	1243 aa		3.1	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms