RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 EXOC5O00471 708 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 IL2RBP14784 551 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 MTHFSP49914 203 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 DDB1Q16531 1140 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 NBPF6Q5VWK0 638 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 NBPF4Q96M43 638 aa14.9□□□□□ -0.02
CHD3-216ENST00000573936 EIF4A2Q14240 407 aaKnown RBP14.88□□□□□ -0.03
CHD3-216ENST00000573936 RALBP1Q15311 655 aa14.87□□□□□ -0.03
CHD3-216ENST00000573936 RAPGEF4Q8WZA2 1011 aa14.87□□□□□ -0.03
CHD3-216ENST00000573936 EYA1Q99502 592 aa14.87□□□□□ -0.03
CHD3-216ENST00000573936 TATP17735 454 aaPredicted RBP14.86□□□□□ -0.03
CHD3-216ENST00000573936 CFAP53Q96M91 514 aa14.86□□□□□ -0.03
CHD3-216ENST00000573936 PPP2R1AP30153 589 aa14.85□□□□□ -0.03
CHD3-216ENST00000573936 PTF1AQ7RTS3 328 aa14.85□□□□□ -0.03
CHD3-216ENST00000573936 USHBP1Q8N6Y0 703 aa14.85□□□□□ -0.03
CHD3-216ENST00000573936 TNS2Q63HR2 1409 aa14.84□□□□□ -0.03
CHD3-216ENST00000573936 PLSCR1O15162 318 aa14.84□□□□□ -0.03
CHD3-216ENST00000573936 DIAPH1O60610 1272 aaKnown RBP14.84□□□□□ -0.03
CHD3-216ENST00000573936 IL13P35225 146 aa14.84□□□□□ -0.03
CHD3-216ENST00000573936 MARCH10Q8NA82 808 aaPredicted RBP14.84□□□□□ -0.03
CHD3-216ENST00000573936 BCL11BQ9C0K0 894 aaPredicted RBP14.84□□□□□ -0.03
CHD3-216ENST00000573936 ZCRB1Q8TBF4 217 aaKnown RBP14.83□□□□□ -0.04
CHD3-216ENST00000573936 ANO8Q9HCE9 1232 aaPredicted RBP14.83□□□□□ -0.04
CHD3-216ENST00000573936 IGSF1Q8N6C5 1336 aa14.83□□□□□ -0.04
CHD3-216ENST00000573936 NCAPD2Q15021 1401 aa14.83□□□□□ -0.04
CHD3-216ENST00000573936 CASZ1Q86V15 1759 aa14.82□□□□□ -0.04
CHD3-216ENST00000573936 BCL9O00512 1426 aa14.82□□□□□ -0.04
CHD3-216ENST00000573936 NUDCQ9Y266 331 aa14.81□□□□□ -0.04
CHD3-216ENST00000573936 PLEKHG2Q9H7P9 1386 aa14.81□□□□□ -0.04
CHD3-216ENST00000573936 NHSQ6T4R5 1651 aa14.81□□□□□ -0.04
CHD3-216ENST00000573936 RGPD2P0DJD1 1756 aa14.8□□□□□ -0.04
CHD3-216ENST00000573936 UTRNP46939 3433 aa14.8□□□□□ -0.04
CHD3-216ENST00000573936 SPG7Q9UQ90 795 aa14.8□□□□□ -0.04
CHD3-216ENST00000573936 MEGF6O75095 1541 aa14.79□□□□□ -0.04
CHD3-216ENST00000573936 ZBTB7AO95365 584 aa14.79□□□□□ -0.04
CHD3-216ENST00000573936 DDX54Q8TDD1 881 aaKnown RBP14.79□□□□□ -0.04
CHD3-216ENST00000573936 STK32BQ9NY57 414 aa14.79□□□□□ -0.04
CHD3-216ENST00000573936 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.79□□□□□ -0.04
CHD3-216ENST00000573936 MYBBP1AQ9BQG0 1328 aaKnown RBP14.78□□□□□ -0.04
CHD3-216ENST00000573936 SULT6B1Q6IMI4 303 aa14.78□□□□□ -0.04
CHD3-216ENST00000573936 PCDH11XQ9BZA7 1347 aa14.77□□□□□ -0.04
CHD3-216ENST00000573936 PCDH11YQ9BZA8 1340 aa14.77□□□□□ -0.04
CHD3-216ENST00000573936 PLEKHO1Q53GL0 409 aaPredicted RBP14.77□□□□□ -0.05
CHD3-216ENST00000573936 PRKRIP1Q9H875 184 aaPredicted RBP14.77□□□□□ -0.05
CHD3-216ENST00000573936 ATF5Q9Y2D1 282 aaPredicted RBP14.77□□□□□ -0.05
CHD3-216ENST00000573936 U2SURPO15042 1029 aaKnown RBP14.76□□□□□ -0.05
CHD3-216ENST00000573936 AMOTQ4VCS5 1084 aa14.76□□□□□ -0.05
CHD3-216ENST00000573936 PROM2Q8N271 834 aa14.76□□□□□ -0.05
CHD3-216ENST00000573936 PDGFDQ9GZP0 370 aaPredicted RBP14.76□□□□□ -0.05
CHD3-216ENST00000573936 COL3A1P02461 1466 aaPredicted RBP14.76□□□□□ -0.05
CHD3-216ENST00000573936 KDRP35968 1356 aa14.75□□□□□ -0.05
CHD3-216ENST00000573936 TXNRD1Q16881 649 aa14.75□□□□□ -0.05
CHD3-216ENST00000573936 ACSBG1Q96GR2 724 aa14.75□□□□□ -0.05
CHD3-216ENST00000573936 BTAF1O14981 1849 aa14.75□□□□□ -0.05
CHD3-216ENST00000573936 ANP32CO43423 234 aa14.74□□□□□ -0.05
CHD3-216ENST00000573936 AEBP1Q8IUX7 1158 aa14.74□□□□□ -0.05
CHD3-216ENST00000573936 HMOX1P09601 288 aa14.73□□□□□ -0.05
CHD3-216ENST00000573936 SLC15A2Q16348 729 aa14.73□□□□□ -0.05
CHD3-216ENST00000573936 IFNL2Q8IZJ0 200 aa14.73□□□□□ -0.05
CHD3-216ENST00000573936 KAT6BQ8WYB5 2073 aa14.73□□□□□ -0.05
CHD3-216ENST00000573936 PAPPAQ13219 1627 aa14.73□□□□□ -0.05
CHD3-216ENST00000573936 HSP90AB1P08238 724 aaKnown RBP14.72□□□□□ -0.05
CHD3-216ENST00000573936 U2AF1L5P0DN76 240 aaPredicted RBP14.72□□□□□ -0.05
CHD3-216ENST00000573936 U2AF1Q01081 240 aaKnown RBP eCLIP14.72□□□□□ -0.05
CHD3-216ENST00000573936 ZNF784Q8NCA9 323 aaPredicted RBP14.72□□□□□ -0.05
CHD3-216ENST00000573936 GOLGB1Q14789 3259 aaKnown RBP14.71□□□□□ -0.05
CHD3-216ENST00000573936 CYP27B1O15528 508 aa14.71□□□□□ -0.05
CHD3-216ENST00000573936 PTGER2P43116 358 aa14.71□□□□□ -0.05
CHD3-216ENST00000573936 NKX1-1Q15270 411 aaPredicted RBP14.71□□□□□ -0.05
CHD3-216ENST00000573936 SYT17Q9BSW7 474 aa14.71□□□□□ -0.05
CHD3-216ENST00000573936 FHDC1Q9C0D6 1143 aaPredicted RBP14.71□□□□□ -0.05
CHD3-216ENST00000573936 MTFR1LQ9H019 292 aa14.71□□□□□ -0.05
CHD3-216ENST00000573936 PKD1L3Q7Z443 1732 aa14.7□□□□□ -0.06
CHD3-216ENST00000573936 FCHSD2O94868 740 aa14.7□□□□□ -0.06
CHD3-216ENST00000573936 PHKG2P15735 406 aa14.7□□□□□ -0.06
CHD3-216ENST00000573936 C1orf141Q5JVX7 400 aa14.7□□□□□ -0.06
CHD3-216ENST00000573936 IFFO2Q5TF58 517 aa14.7□□□□□ -0.06
CHD3-216ENST00000573936 ZNF530Q6P9A1 599 aaPredicted RBP14.7□□□□□ -0.06
CHD3-216ENST00000573936 PNNQ9H307 717 aaKnown RBP14.7□□□□□ -0.06
CHD3-216ENST00000573936 NEFMP07197 916 aa14.69□□□□□ -0.06
CHD3-216ENST00000573936 DOT1LQ8TEK3 1739 aa14.69□□□□□ -0.06
CHD3-216ENST00000573936 SENP3-EIF4A1A0A087X0R7 540 aa14.68□□□□□ -0.06
CHD3-216ENST00000573936 AKAP4Q5JQC9 854 aa14.68□□□□□ -0.06
CHD3-216ENST00000573936 GAS2L2Q8NHY3 880 aa14.68□□□□□ -0.06
CHD3-216ENST00000573936 RSPH6AQ9H0K4 717 aa14.68□□□□□ -0.06
CHD3-216ENST00000573936 SHANK3Q9BYB0 1731 aa14.67□□□□□ -0.06
CHD3-216ENST00000573936 PRIM1P49642 420 aaKnown RBP14.67□□□□□ -0.06
CHD3-216ENST00000573936 SYTL4Q96C24 671 aaPredicted RBP14.67□□□□□ -0.06
CHD3-216ENST00000573936 DCAF5Q96JK2 942 aa14.67□□□□□ -0.06
CHD3-216ENST00000573936 ARXQ96QS3 562 aa14.67□□□□□ -0.06
CHD3-216ENST00000573936 PRKAR2BP31323 418 aa14.66□□□□□ -0.06
CHD3-216ENST00000573936 GPR162Q16538 588 aa14.66□□□□□ -0.06
CHD3-216ENST00000573936 ERVV-2B6SEH9 535 aa14.65□□□□□ -0.06
CHD3-216ENST00000573936 WDR43Q15061 677 aaKnown RBP eCLIP14.65□□□□□ -0.06
CHD3-216ENST00000573936 ZNF827Q17R98 1081 aa14.65□□□□□ -0.06
CHD3-216ENST00000573936 MTHFSDQ2M296 383 aaKnown RBP14.65□□□□□ -0.06
CHD3-216ENST00000573936 C1QTNF8P60827 252 aa14.64□□□□□ -0.07
CHD3-216ENST00000573936 TUBGCP6Q96RT7 1819 aa14.64□□□□□ -0.07
CHD3-216ENST00000573936 KLHL34Q8N239 644 aa14.63□□□□□ -0.07
CHD3-216ENST00000573936 LRRC4BQ9NT99 713 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms