RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 BAG6P46379 1132 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 GOLGA2Q08379 1002 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 SSH2Q76I76 1423 aa8.91□□□□□ -0.98
NUP88-206ENST00000573169 GCP02774 474 aa8.91□□□□□ -0.98
NUP88-206ENST00000573169 NLRP6P59044 892 aa8.91□□□□□ -0.98
NUP88-206ENST00000573169 NLRP13Q86W25 1043 aa8.91□□□□□ -0.98
NUP88-206ENST00000573169 TRPM1Q7Z4N2 1603 aa8.91□□□□□ -0.98
NUP88-206ENST00000573169 TRIM37O94972 964 aa8.9□□□□□ -0.98
NUP88-206ENST00000573169 HNRNPUQ00839 825 aaKnown RBP eCLIP8.9□□□□□ -0.98
NUP88-206ENST00000573169 EZH2Q15910 746 aaKnown RBP8.9□□□□□ -0.98
NUP88-206ENST00000573169 MS4A3Q96HJ5 214 aa8.9□□□□□ -0.98
NUP88-206ENST00000573169 LMO7Q8WWI1 1683 aa8.9□□□□□ -0.98
NUP88-206ENST00000573169 USP6P35125 1406 aa8.89□□□□□ -0.99
NUP88-206ENST00000573169 ROCK2O75116 1388 aaKnown RBP8.89□□□□□ -0.99
NUP88-206ENST00000573169 CPDO75976 1380 aa8.89□□□□□ -0.99
NUP88-206ENST00000573169 SRCAPQ6ZRS2 3230 aa8.89□□□□□ -0.99
NUP88-206ENST00000573169 EVC2Q86UK5 1308 aa8.89□□□□□ -0.99
NUP88-206ENST00000573169 SOX12O15370 315 aa8.89□□□□□ -0.99
NUP88-206ENST00000573169 HSPA5P11021 654 aaKnown RBP8.89□□□□□ -0.99
NUP88-206ENST00000573169 SMG6Q86US8 1419 aaKnown RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 CCDC7Q96M83 1385 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 EIF4G2P78344 907 aaKnown RBP eCLIP8.88□□□□□ -0.99
NUP88-206ENST00000573169 PDE3BQ13370 1112 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 R3HDM1Q15032 1099 aaKnown RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 NKX1-1Q15270 411 aaPredicted RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 FAM196AQ6ZSG2 479 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 BARGINQ6ZT62 677 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 TCP11L2Q8N4U5 519 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 PRKRIP1Q9H875 184 aaPredicted RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 AXIN2Q9Y2T1 843 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 COL5A2P05997 1499 aaPredicted RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 RGPD1P0DJD0 1748 aa8.88□□□□□ -0.99
NUP88-206ENST00000573169 TNS1Q9HBL0 1735 aaKnown RBP8.88□□□□□ -0.99
NUP88-206ENST00000573169 TTC21BQ7Z4L5 1316 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 APBA3O96018 575 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 VSIG10Q8N0Z9 540 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 CAMKK2Q96RR4 588 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 TMEM106CQ9BVX2 250 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 PIK3C2AO00443 1686 aa8.87□□□□□ -0.99
NUP88-206ENST00000573169 SLIT3O75094 1523 aa8.86□□□□□ -0.99
NUP88-206ENST00000573169 GALR2O43603 387 aaPredicted RBP8.86□□□□□ -0.99
NUP88-206ENST00000573169 TIE1P35590 1138 aa8.86□□□□□ -0.99
NUP88-206ENST00000573169 BRD4O60885 1362 aaPredicted RBP8.86□□□□□ -0.99
NUP88-206ENST00000573169 AATKQ6ZMQ8 1374 aa8.86□□□□□ -0.99
NUP88-206ENST00000573169 GTPBP6O43824 516 aaPredicted RBP8.85□□□□□ -0.99
NUP88-206ENST00000573169 TOM1L2Q6ZVM7 507 aa8.85□□□□□ -0.99
NUP88-206ENST00000573169 DISP2A7MBM2 1401 aa8.85□□□□□ -0.99
NUP88-206ENST00000573169 CRB1P82279 1406 aa8.85□□□□□ -0.99
NUP88-206ENST00000573169 COL18A1P39060 1754 aa8.84□□□□□ -0.99
NUP88-206ENST00000573169 CPSF1Q10570 1443 aaKnown RBP8.84□□□□□ -0.99
NUP88-206ENST00000573169 MKRN3Q13064 507 aaKnown RBP8.84□□□□□ -0.99
NUP88-206ENST00000573169 ERICH6Q7L0X2 663 aa8.84□□□□□ -0.99
NUP88-206ENST00000573169 PTF1AQ7RTS3 328 aa8.84□□□□□ -0.99
NUP88-206ENST00000573169 ARHGEF25Q86VW2 580 aa8.84□□□□□ -0.99
NUP88-206ENST00000573169 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.84□□□□□ -0.99
NUP88-206ENST00000573169 CARD11Q9BXL7 1154 aa8.84□□□□□ -0.99
NUP88-206ENST00000573169 THRAP3Q9Y2W1 955 aaKnown RBP8.84□□□□□ -0.99
NUP88-206ENST00000573169 KTN1Q86UP2 1357 aaKnown RBP8.84□□□□□ -0.99
NUP88-206ENST00000573169 NME9Q86XW9 330 aa8.83□□□□□ -1
NUP88-206ENST00000573169 TMC1Q8TDI8 760 aa8.83□□□□□ -1
NUP88-206ENST00000573169 FAM163AQ96GL9 167 aaPredicted RBP8.83□□□□□ -1
NUP88-206ENST00000573169 SLC12A5Q9H2X9 1139 aa8.83□□□□□ -1
NUP88-206ENST00000573169 AKAP12Q02952 1782 aa8.83□□□□□ -1
NUP88-206ENST00000573169 LRP5O75197 1615 aa8.83□□□□□ -1
NUP88-206ENST00000573169 WDR17Q8IZU2 1322 aa8.82□□□□□ -1
NUP88-206ENST00000573169 TTC21AQ8NDW8 1320 aa8.82□□□□□ -1
NUP88-206ENST00000573169 RGPD5Q99666 1765 aa8.82□□□□□ -1
NUP88-206ENST00000573169 CSB-PGBD3P0DP91 1061 aa8.82□□□□□ -1
NUP88-206ENST00000573169 DDB1Q16531 1140 aa8.82□□□□□ -1
NUP88-206ENST00000573169 EFCAB3Q8N7B9 438 aa8.82□□□□□ -1
NUP88-206ENST00000573169 MARCH10Q8NA82 808 aaPredicted RBP8.82□□□□□ -1
NUP88-206ENST00000573169 NOP58Q9Y2X3 529 aaKnown RBP8.82□□□□□ -1
NUP88-206ENST00000573169 PARP4Q9UKK3 1724 aaKnown RBP8.82□□□□□ -1
NUP88-206ENST00000573169 CD163L1Q9NR16 1453 aa8.82□□□□□ -1
NUP88-206ENST00000573169 NFAT5O94916 1531 aa8.81□□□□□ -1
NUP88-206ENST00000573169 KCNH5Q8NCM2 988 aa8.81□□□□□ -1
NUP88-206ENST00000573169 LRRC37A3O60309 1634 aa8.8□□□□□ -1
NUP88-206ENST00000573169 PEAK1Q9H792 1746 aa8.8□□□□□ -1
NUP88-206ENST00000573169 POTEJP0CG39 1038 aa8.8□□□□□ -1
NUP88-206ENST00000573169 DEKP35659 375 aaKnown RBP8.8□□□□□ -1
NUP88-206ENST00000573169 CCDC184Q52MB2 194 aa8.8□□□□□ -1
NUP88-206ENST00000573169 CARD10Q9BWT7 1032 aa8.8□□□□□ -1
NUP88-206ENST00000573169 SBNO2Q9Y2G9 1366 aa8.8□□□□□ -1
NUP88-206ENST00000573169 RREB1Q92766 1687 aa8.8□□□□□ -1
NUP88-206ENST00000573169 NUP188Q5SRE5 1749 aa8.8□□□□□ -1
NUP88-206ENST00000573169 MON2Q7Z3U7 1717 aa8.8□□□□□ -1
NUP88-206ENST00000573169 OVOS2A0A0G2JMS6 1433 aa8.8□□□□□ -1
NUP88-206ENST00000573169 OVOS2A0A0J9YW53 1432 aa8.8□□□□□ -1
NUP88-206ENST00000573169 OVOS2Q6IE36 1432 aa8.8□□□□□ -1
NUP88-206ENST00000573169 USP31Q70CQ4 1352 aa8.79□□□□□ -1
NUP88-206ENST00000573169 PARD3Q8TEW0 1356 aa8.79□□□□□ -1
NUP88-206ENST00000573169 TTLL13PA6NNM8 815 aa8.79□□□□□ -1
NUP88-206ENST00000573169 C11orf95C9JLR9 678 aaPredicted RBP8.79□□□□□ -1
NUP88-206ENST00000573169 NUDCQ9Y266 331 aa8.79□□□□□ -1
NUP88-206ENST00000573169 INSRP06213 1382 aa8.78□□□□□ -1
NUP88-206ENST00000573169 ST20-MTHFSA0A0A6YYL1 179 aa8.78□□□□□ -1
NUP88-206ENST00000573169 FBLN1P23142 703 aa8.78□□□□□ -1
NUP88-206ENST00000573169 NBPF14Q5TI25 921 aa8.78□□□□□ -1
NUP88-206ENST00000573169 HDGFL2Q7Z4V5 671 aaPredicted RBP8.78□□□□□ -1
NUP88-206ENST00000573169 MFRPQ9BY79 579 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms