RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 MEGF6O75095 1541 aa21.48■■□□□ 1.03
CHD3-215ENST00000572750 NBPF6Q5VWK0 638 aa21.47■■□□□ 1.03
CHD3-215ENST00000572750 NBPF4Q96M43 638 aa21.47■■□□□ 1.03
CHD3-215ENST00000572750 IL2RBP14784 551 aa21.45■■□□□ 1.02
CHD3-215ENST00000572750 C1QTNF8P60827 252 aa21.45■■□□□ 1.02
CHD3-215ENST00000572750 EIF4A2Q14240 407 aaKnown RBP21.45■■□□□ 1.02
CHD3-215ENST00000572750 DDB1Q16531 1140 aa21.45■■□□□ 1.02
CHD3-215ENST00000572750 CDCA7Q9BWT1 371 aaPredicted RBP21.45■■□□□ 1.02
CHD3-215ENST00000572750 NCAPD2Q15021 1401 aa21.45■■□□□ 1.02
CHD3-215ENST00000572750 PDE3BQ13370 1112 aa21.44■■□□□ 1.02
CHD3-215ENST00000572750 GOLGB1Q14789 3259 aaKnown RBP21.44■■□□□ 1.02
CHD3-215ENST00000572750 DCAF8L1A6NGE4 600 aa21.43■■□□□ 1.02
CHD3-215ENST00000572750 MTHFSP49914 203 aa21.43■■□□□ 1.02
CHD3-215ENST00000572750 PDGFDQ9GZP0 370 aaPredicted RBP21.43■■□□□ 1.02
CHD3-215ENST00000572750 OVOS2A0A0G2JMS6 1433 aa21.42■■□□□ 1.02
CHD3-215ENST00000572750 COL3A1P02461 1466 aaPredicted RBP21.42■■□□□ 1.02
CHD3-215ENST00000572750 NBPF14Q5TI25 921 aa21.42■■□□□ 1.02
CHD3-215ENST00000572750 CASZ1Q86V15 1759 aa21.42■■□□□ 1.02
CHD3-215ENST00000572750 PKD1L3Q7Z443 1732 aa21.41■■□□□ 1.02
CHD3-215ENST00000572750 SBF2Q86WG5 1849 aa21.41■■□□□ 1.02
CHD3-215ENST00000572750 ZNF316A6NFI3 1004 aaPredicted RBP21.4■■□□□ 1.02
CHD3-215ENST00000572750 EYA1Q99502 592 aa21.39■■□□□ 1.01
CHD3-215ENST00000572750 IGSF1Q8N6C5 1336 aa21.37■■□□□ 1.01
CHD3-215ENST00000572750 EXOC5O00471 708 aa21.37■■□□□ 1.01
CHD3-215ENST00000572750 MARCH10Q8NA82 808 aaPredicted RBP21.37■■□□□ 1.01
CHD3-215ENST00000572750 ANO8Q9HCE9 1232 aaPredicted RBP21.37■■□□□ 1.01
CHD3-215ENST00000572750 PPP2R1AP30153 589 aa21.36■■□□□ 1.01
CHD3-215ENST00000572750 RAPGEF4Q8WZA2 1011 aa21.36■■□□□ 1.01
CHD3-215ENST00000572750 DOT1LQ8TEK3 1739 aa21.35■■□□□ 1.01
CHD3-215ENST00000572750 IL13P35225 146 aa21.35■■□□□ 1.01
CHD3-215ENST00000572750 NHSQ6T4R5 1651 aa21.34■■□□□ 1.01
CHD3-215ENST00000572750 PTGER2P43116 358 aa21.34■■□□□ 1.01
CHD3-215ENST00000572750 TATP17735 454 aaPredicted RBP21.33■■□□□ 1.01
CHD3-215ENST00000572750 AEBP1Q8IUX7 1158 aa21.32■■□□□ 1
CHD3-215ENST00000572750 DIAPH1O60610 1272 aaKnown RBP21.31■■□□□ 1
CHD3-215ENST00000572750 CHD4Q14839 1912 aa21.31■■□□□ 1
CHD3-215ENST00000572750 BCL9O00512 1426 aa21.3■■□□□ 1
CHD3-215ENST00000572750 ZBTB7AO95365 584 aa21.3■■□□□ 1
CHD3-215ENST00000572750 ZCRB1Q8TBF4 217 aaKnown RBP21.3■■□□□ 1
CHD3-215ENST00000572750 DDX54Q8TDD1 881 aaKnown RBP21.3■■□□□ 1
CHD3-215ENST00000572750 KDRP35968 1356 aa21.3■■□□□ 1
CHD3-215ENST00000572750 TOGARAM1Q9Y4F4 1720 aa21.29■■□□□ 1
CHD3-215ENST00000572750 SULT6B1Q6IMI4 303 aa21.28■■□□□ 1
CHD3-215ENST00000572750 PTF1AQ7RTS3 328 aa21.28■■□□□ 1
CHD3-215ENST00000572750 PCDH11XQ9BZA7 1347 aa21.28■■□□□ 1
CHD3-215ENST00000572750 PCDH11YQ9BZA8 1340 aa21.28■■□□□ 1
CHD3-215ENST00000572750 CFAP53Q96M91 514 aa21.27■■□□□ 1
CHD3-215ENST00000572750 SYT17Q9BSW7 474 aa21.27■■□□□ 1
CHD3-215ENST00000572750 RGPD3A6NKT7 1758 aaPredicted RBP21.27■■□□□ 1
CHD3-215ENST00000572750 RGPD4Q7Z3J3 1758 aa21.27■■□□□ 1
CHD3-215ENST00000572750 BTAF1O14981 1849 aa21.27■□□□□ 0.99
CHD3-215ENST00000572750 RALBP1Q15311 655 aa21.26■□□□□ 0.99
CHD3-215ENST00000572750 FHDC1Q9C0D6 1143 aaPredicted RBP21.26■□□□□ 0.99
CHD3-215ENST00000572750 ATF5Q9Y2D1 282 aaPredicted RBP21.26■□□□□ 0.99
CHD3-215ENST00000572750 HMOX1P09601 288 aa21.25■□□□□ 0.99
CHD3-215ENST00000572750 PROM2Q8N271 834 aa21.25■□□□□ 0.99
CHD3-215ENST00000572750 PLEKHG2Q9H7P9 1386 aa21.24■□□□□ 0.99
CHD3-215ENST00000572750 U2SURPO15042 1029 aaKnown RBP21.24■□□□□ 0.99
CHD3-215ENST00000572750 ACSBG1Q96GR2 724 aa21.24■□□□□ 0.99
CHD3-215ENST00000572750 CYP27B1O15528 508 aa21.23■□□□□ 0.99
CHD3-215ENST00000572750 SPG7Q9UQ90 795 aa21.23■□□□□ 0.99
CHD3-215ENST00000572750 KAT6BQ8WYB5 2073 aa21.23■□□□□ 0.99
CHD3-215ENST00000572750 MYBBP1AQ9BQG0 1328 aaKnown RBP21.23■□□□□ 0.99
CHD3-215ENST00000572750 SGIP1Q9BQI5 828 aa21.22■□□□□ 0.99
CHD3-215ENST00000572750 ITGB4P16144 1822 aa21.21■□□□□ 0.99
CHD3-215ENST00000572750 PLSCR1O15162 318 aa21.21■□□□□ 0.99
CHD3-215ENST00000572750 PRKRIP1Q9H875 184 aaPredicted RBP21.21■□□□□ 0.99
CHD3-215ENST00000572750 BCL11BQ9C0K0 894 aaPredicted RBP21.2■□□□□ 0.98
CHD3-215ENST00000572750 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.2■□□□□ 0.98
CHD3-215ENST00000572750 VIRMAQ69YN4 1812 aaKnown RBP21.19■□□□□ 0.98
CHD3-215ENST00000572750 PHKG2P15735 406 aa21.17■□□□□ 0.98
CHD3-215ENST00000572750 PLEKHO1Q53GL0 409 aaPredicted RBP21.17■□□□□ 0.98
CHD3-215ENST00000572750 ZNF530Q6P9A1 599 aaPredicted RBP21.17■□□□□ 0.98
CHD3-215ENST00000572750 SYTL4Q96C24 671 aaPredicted RBP21.17■□□□□ 0.98
CHD3-215ENST00000572750 NUDCQ9Y266 331 aa21.17■□□□□ 0.98
CHD3-215ENST00000572750 KDM6AO15550 1401 aaPredicted RBP21.15■□□□□ 0.98
CHD3-215ENST00000572750 GIGYF1O75420 1035 aaPredicted RBP21.15■□□□□ 0.98
CHD3-215ENST00000572750 U2AF1L5P0DN76 240 aaPredicted RBP21.15■□□□□ 0.98
CHD3-215ENST00000572750 U2AF1Q01081 240 aaKnown RBP eCLIP21.15■□□□□ 0.98
CHD3-215ENST00000572750 AMOTQ4VCS5 1084 aa21.15■□□□□ 0.98
CHD3-215ENST00000572750 IFNL2Q8IZJ0 200 aa21.15■□□□□ 0.98
CHD3-215ENST00000572750 SCN11AQ9UI33 1791 aa21.15■□□□□ 0.98
CHD3-215ENST00000572750 PRIM1P49642 420 aaKnown RBP21.14■□□□□ 0.97
CHD3-215ENST00000572750 RSPH6AQ9H0K4 717 aa21.14■□□□□ 0.97
CHD3-215ENST00000572750 LY75O60449 1722 aa21.12■□□□□ 0.97
CHD3-215ENST00000572750 PRKAR2BP31323 418 aa21.12■□□□□ 0.97
CHD3-215ENST00000572750 NKX1-1Q15270 411 aaPredicted RBP21.12■□□□□ 0.97
CHD3-215ENST00000572750 C1orf141Q5JVX7 400 aa21.11■□□□□ 0.97
CHD3-215ENST00000572750 ADAMTS7Q9UKP4 1686 aa21.11■□□□□ 0.97
CHD3-215ENST00000572750 MTHFSDQ2M296 383 aaKnown RBP21.1■□□□□ 0.97
CHD3-215ENST00000572750 MTFR1LQ9H019 292 aa21.09■□□□□ 0.97
CHD3-215ENST00000572750 SLC15A2Q16348 729 aa21.08■□□□□ 0.97
CHD3-215ENST00000572750 MPRIPQ6WCQ1 1025 aa21.08■□□□□ 0.97
CHD3-215ENST00000572750 ANP32CO43423 234 aa21.07■□□□□ 0.96
CHD3-215ENST00000572750 HSP90AB1P08238 724 aaKnown RBP21.07■□□□□ 0.96
CHD3-215ENST00000572750 DCAF5Q96JK2 942 aa21.07■□□□□ 0.96
CHD3-215ENST00000572750 PHACTR3Q96KR7 559 aa21.07■□□□□ 0.96
CHD3-215ENST00000572750 ARXQ96QS3 562 aa21.07■□□□□ 0.96
CHD3-215ENST00000572750 MAP3K5Q99683 1374 aa21.07■□□□□ 0.96
CHD3-215ENST00000572750 PAPPAQ13219 1627 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms