RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 CNTNAP5Q8WYK1 1306 aa9.7□□□□□ -0.86
CHD9-215ENST00000565442 IGF1RP08069 1367 aa9.69□□□□□ -0.86
CHD9-215ENST00000565442 RHOQP17081 205 aa9.69□□□□□ -0.86
CHD9-215ENST00000565442 PRICKLE2Q7Z3G6 844 aa9.69□□□□□ -0.86
CHD9-215ENST00000565442 TRIM22Q8IYM9 498 aa9.69□□□□□ -0.86
CHD9-215ENST00000565442 RNF144AP50876 292 aaPredicted RBP9.68□□□□□ -0.86
CHD9-215ENST00000565442 PODNQ7Z5L7 613 aa9.68□□□□□ -0.86
CHD9-215ENST00000565442 DZIP3Q86Y13 1208 aaKnown RBP9.68□□□□□ -0.86
CHD9-215ENST00000565442 ESPNB1AK53 854 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 GPR25O00155 361 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 ITGB2P05107 769 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 BCRP11274 1271 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 FBXO31Q5XUX0 539 aaPredicted RBP9.67□□□□□ -0.86
CHD9-215ENST00000565442 FOXR1Q6PIV2 292 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 BEND7Q8N7W2 519 aaPredicted RBP9.67□□□□□ -0.86
CHD9-215ENST00000565442 NEDD1Q8NHV4 660 aa9.67□□□□□ -0.86
CHD9-215ENST00000565442 PNMA1Q8ND90 353 aa9.66□□□□□ -0.86
CHD9-215ENST00000565442 PROCP04070 461 aa9.65□□□□□ -0.86
CHD9-215ENST00000565442 PPP2R2DQ66LE6 453 aa9.65□□□□□ -0.86
CHD9-215ENST00000565442 CYLDQ9NQC7 956 aa9.65□□□□□ -0.86
CHD9-215ENST00000565442 DBN1Q16643 649 aa9.64□□□□□ -0.87
CHD9-215ENST00000565442 RIPOR1Q6ZS17 1223 aa9.64□□□□□ -0.87
CHD9-215ENST00000565442 EPS8L1Q8TE68 723 aa9.64□□□□□ -0.87
CHD9-215ENST00000565442 AP1G2O75843 785 aa9.63□□□□□ -0.87
CHD9-215ENST00000565442 SKIV2LQ15477 1246 aaKnown RBP9.63□□□□□ -0.87
CHD9-215ENST00000565442 SEPT12Q8IYM1 358 aa9.63□□□□□ -0.87
CHD9-215ENST00000565442 GALNT6Q8NCL4 622 aa9.63□□□□□ -0.87
CHD9-215ENST00000565442 TRIM52Q96A61 297 aa9.63□□□□□ -0.87
CHD9-215ENST00000565442 ACDQ96AP0 544 aa9.63□□□□□ -0.87
CHD9-215ENST00000565442 ATP5J2-PTCD1G3V325 749 aa9.62□□□□□ -0.87
CHD9-215ENST00000565442 GPC1P35052 558 aa9.62□□□□□ -0.87
CHD9-215ENST00000565442 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.62□□□□□ -0.87
CHD9-215ENST00000565442 DYRK1BQ9Y463 629 aa9.62□□□□□ -0.87
CHD9-215ENST00000565442 H7C1W4 665 aa9.61□□□□□ -0.87
CHD9-215ENST00000565442 PROCA1Q8NCQ7 364 aaPredicted RBP9.61□□□□□ -0.87
CHD9-215ENST00000565442 GTPBP3Q969Y2 492 aaKnown RBP9.61□□□□□ -0.87
CHD9-215ENST00000565442 TRERF1Q96PN7 1200 aa9.61□□□□□ -0.87
CHD9-215ENST00000565442 HMX1Q9NP08 348 aaPredicted RBP9.61□□□□□ -0.87
CHD9-215ENST00000565442 LRRC4BQ9NT99 713 aa9.61□□□□□ -0.87
CHD9-215ENST00000565442 MEN1O00255 615 aa9.6□□□□□ -0.87
CHD9-215ENST00000565442 BRPF1P55201 1214 aaPredicted RBP9.6□□□□□ -0.87
CHD9-215ENST00000565442 SH3D19Q5HYK7 790 aa9.6□□□□□ -0.87
CHD9-215ENST00000565442 GAS2L1Q99501 681 aaPredicted RBP9.59□□□□□ -0.87
CHD9-215ENST00000565442 USP17L8P0C7I0 530 aa9.58□□□□□ -0.88
CHD9-215ENST00000565442 MX2P20592 715 aa9.58□□□□□ -0.88
CHD9-215ENST00000565442 ATP1B4Q9UN42 357 aaPredicted RBP9.58□□□□□ -0.88
CHD9-215ENST00000565442 NSFL1CQ9UNZ2 370 aaKnown RBP9.58□□□□□ -0.88
CHD9-215ENST00000565442 POU4F2Q12837 409 aa9.57□□□□□ -0.88
CHD9-215ENST00000565442 NEUROD2Q15784 382 aa9.57□□□□□ -0.88
CHD9-215ENST00000565442 A0A1W2PRU2 124 aa9.56□□□□□ -0.88
CHD9-215ENST00000565442 K7ELQ4 463 aaPredicted RBP9.56□□□□□ -0.88
CHD9-215ENST00000565442 OIP5O43482 229 aa9.56□□□□□ -0.88
CHD9-215ENST00000565442 SLC27A3Q5K4L6 730 aa9.56□□□□□ -0.88
CHD9-215ENST00000565442 NBPF10Q6P3W6 841 aaKnown RBP9.54□□□□□ -0.88
CHD9-215ENST00000565442 NBPF15Q8N660 670 aa9.54□□□□□ -0.88
CHD9-215ENST00000565442 GIGYF1O75420 1035 aaPredicted RBP9.53□□□□□ -0.88
CHD9-215ENST00000565442 NLRP3Q96P20 1036 aa9.53□□□□□ -0.88
CHD9-215ENST00000565442 OXCT2Q9BYC2 517 aaPredicted RBP9.53□□□□□ -0.88
CHD9-215ENST00000565442 GRIP2Q9C0E4 1043 aa9.53□□□□□ -0.88
CHD9-215ENST00000565442 NUCKS1Q9H1E3 243 aaKnown RBP9.53□□□□□ -0.88
CHD9-215ENST00000565442 BAG6P46379 1132 aa9.52□□□□□ -0.89
CHD9-215ENST00000565442 ERVK-9P63128 1117 aa9.52□□□□□ -0.89
CHD9-215ENST00000565442 SNRPNP63162 240 aaKnown RBP9.52□□□□□ -0.89
CHD9-215ENST00000565442 CC2D2BQ6DHV5 1058 aa9.52□□□□□ -0.89
CHD9-215ENST00000565442 KRBA1A5PL33 1030 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 SPATA31C2B4DYI2 1134 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 MAP2K3P46734 347 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 CLN3Q13286 438 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 WDR44Q5JSH3 913 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 PCDHB9Q9Y5E1 797 aa9.51□□□□□ -0.89
CHD9-215ENST00000565442 F11P03951 625 aa9.5□□□□□ -0.89
CHD9-215ENST00000565442 CCDC125Q86Z20 511 aa9.5□□□□□ -0.89
CHD9-215ENST00000565442 DDRGK1Q96HY6 314 aa9.5□□□□□ -0.89
CHD9-215ENST00000565442 TIMMDC1Q9NPL8 285 aa9.5□□□□□ -0.89
CHD9-215ENST00000565442 MKL2Q9ULH7 1088 aa9.5□□□□□ -0.89
CHD9-215ENST00000565442 ZBBXA8MT70 800 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 SHISA8B8ZZ34 492 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 TMEM132AQ24JP5 1023 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 TAS1R3Q7RTX0 852 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 CYP2U1Q7Z449 544 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 ALYREFQ86V81 257 aaKnown RBP9.49□□□□□ -0.89
CHD9-215ENST00000565442 TRIM34Q9BYJ4 488 aa9.49□□□□□ -0.89
CHD9-215ENST00000565442 GPBP1L1Q9HC44 474 aaPredicted RBP9.49□□□□□ -0.89
CHD9-215ENST00000565442 WASLO00401 505 aaPredicted RBP9.48□□□□□ -0.89
CHD9-215ENST00000565442 CFHR5Q9BXR6 569 aa9.48□□□□□ -0.89
CHD9-215ENST00000565442 FAM117AQ9C073 453 aa9.48□□□□□ -0.89
CHD9-215ENST00000565442 KDM4CQ9H3R0 1056 aa9.47□□□□□ -0.89
CHD9-215ENST00000565442 THBS1P07996 1170 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 FURINP09958 794 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 COL8A1P27658 744 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 RFC5P40937 340 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 RNF20Q5VTR2 975 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 Q8N3U1 123 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 KLRG1Q96E93 195 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 KRTAP4-8Q9BYQ9 185 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 ARHGEF10LQ9HCE6 1279 aa9.46□□□□□ -0.9
CHD9-215ENST00000565442 FBXO45P0C2W1 286 aa9.45□□□□□ -0.9
CHD9-215ENST00000565442 SCTRP47872 440 aa9.45□□□□□ -0.9
CHD9-215ENST00000565442 C1orf229Q6ZS94 237 aaPredicted RBP9.45□□□□□ -0.9
CHD9-215ENST00000565442 RRAGCQ9HB90 399 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms