RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IL2RBP14784 551 aa27.37■■□□□ 1.97
CLN3-212ENST00000564574 MEGF6O75095 1541 aa27.36■■□□□ 1.97
CLN3-212ENST00000564574 PKD1L3Q7Z443 1732 aa27.36■■□□□ 1.97
CLN3-212ENST00000564574 RUNDC1Q96C34 613 aa27.36■■□□□ 1.97
CLN3-212ENST00000564574 PLEKHF1Q96S99 279 aa27.36■■□□□ 1.97
CLN3-212ENST00000564574 OVOS2A0A0G2JMS6 1433 aa27.34■■□□□ 1.97
CLN3-212ENST00000564574 MAPK8IP3Q9UPT6 1336 aa27.34■■□□□ 1.97
CLN3-212ENST00000564574 THSD7AQ9UPZ6 1657 aa27.33■■□□□ 1.97
CLN3-212ENST00000564574 AMOTQ4VCS5 1084 aa27.32■■□□□ 1.96
CLN3-212ENST00000564574 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.32■■□□□ 1.96
CLN3-212ENST00000564574 PLEKHO1Q53GL0 409 aaPredicted RBP27.31■■□□□ 1.96
CLN3-212ENST00000564574 RBM6P78332 1123 aaKnown RBP27.3■■□□□ 1.96
CLN3-212ENST00000564574 CCDC146Q8IYE0 955 aa27.3■■□□□ 1.96
CLN3-212ENST00000564574 SPG7Q9UQ90 795 aa27.29■■□□□ 1.96
CLN3-212ENST00000564574 LRRC37A3O60309 1634 aa27.29■■□□□ 1.96
CLN3-212ENST00000564574 SHANK3Q9BYB0 1731 aa27.29■■□□□ 1.96
CLN3-212ENST00000564574 ONECUT3O60422 494 aaPredicted RBP27.28■■□□□ 1.96
CLN3-212ENST00000564574 FAM98CQ17RN3 349 aaKnown RBP27.28■■□□□ 1.96
CLN3-212ENST00000564574 GAS2L2Q8NHY3 880 aa27.27■■□□□ 1.96
CLN3-212ENST00000564574 PHACTR3Q96KR7 559 aa27.27■■□□□ 1.96
CLN3-212ENST00000564574 TNS2Q63HR2 1409 aa27.26■■□□□ 1.95
CLN3-212ENST00000564574 DLG5Q8TDM6 1919 aa27.26■■□□□ 1.95
CLN3-212ENST00000564574 RXRBP28702 533 aa27.25■■□□□ 1.95
CLN3-212ENST00000564574 ZCRB1Q8TBF4 217 aaKnown RBP27.25■■□□□ 1.95
CLN3-212ENST00000564574 EXOC5O00471 708 aa27.24■■□□□ 1.95
CLN3-212ENST00000564574 NFE2L2Q16236 605 aa27.23■■□□□ 1.95
CLN3-212ENST00000564574 DDB1Q16531 1140 aa27.23■■□□□ 1.95
CLN3-212ENST00000564574 MTHFSDQ2M296 383 aaKnown RBP27.23■■□□□ 1.95
CLN3-212ENST00000564574 PCDH11XQ9BZA7 1347 aa27.22■■□□□ 1.95
CLN3-212ENST00000564574 PCDH11YQ9BZA8 1340 aa27.22■■□□□ 1.95
CLN3-212ENST00000564574 NCBP3Q53F19 620 aaKnown RBP27.22■■□□□ 1.95
CLN3-212ENST00000564574 APAF1O14727 1248 aa27.21■■□□□ 1.95
CLN3-212ENST00000564574 TMPOP42166 694 aaKnown RBP27.21■■□□□ 1.95
CLN3-212ENST00000564574 NGEFQ8N5V2 710 aa27.21■■□□□ 1.95
CLN3-212ENST00000564574 ZNF530Q6P9A1 599 aaPredicted RBP27.2■■□□□ 1.94
CLN3-212ENST00000564574 VIRMAQ69YN4 1812 aaKnown RBP27.19■■□□□ 1.94
CLN3-212ENST00000564574 A0A0G2JS52 829 aa27.19■■□□□ 1.94
CLN3-212ENST00000564574 MYT1Q01538 1121 aa27.19■■□□□ 1.94
CLN3-212ENST00000564574 AKAP4Q5JQC9 854 aa27.18■■□□□ 1.94
CLN3-212ENST00000564574 C1orf141Q5JVX7 400 aa27.18■■□□□ 1.94
CLN3-212ENST00000564574 SEPT12Q8IYM1 358 aa27.18■■□□□ 1.94
CLN3-212ENST00000564574 IFNL2Q8IZJ0 200 aa27.18■■□□□ 1.94
CLN3-212ENST00000564574 BRWD3Q6RI45 1802 aa27.17■■□□□ 1.94
CLN3-212ENST00000564574 MAP3K5Q99683 1374 aa27.17■■□□□ 1.94
CLN3-212ENST00000564574 PHKG2P15735 406 aa27.16■■□□□ 1.94
CLN3-212ENST00000564574 LMOD3Q0VAK6 560 aa27.16■■□□□ 1.94
CLN3-212ENST00000564574 GNAT3A8MTJ3 354 aa27.15■■□□□ 1.94
CLN3-212ENST00000564574 CYP27B1O15528 508 aa27.15■■□□□ 1.94
CLN3-212ENST00000564574 HTATSF1O43719 755 aaKnown RBP27.15■■□□□ 1.94
CLN3-212ENST00000564574 HSP90AB1P08238 724 aaKnown RBP27.15■■□□□ 1.94
CLN3-212ENST00000564574 RIPK4P57078 832 aa27.15■■□□□ 1.94
CLN3-212ENST00000564574 SCN11AQ9UI33 1791 aa27.14■■□□□ 1.94
CLN3-212ENST00000564574 ADAMTS7Q9UKP4 1686 aa27.14■■□□□ 1.94
CLN3-212ENST00000564574 PDE3BQ13370 1112 aa27.13■■□□□ 1.93
CLN3-212ENST00000564574 CCDC27Q2M243 656 aa27.13■■□□□ 1.93
CLN3-212ENST00000564574 DDX54Q8TDD1 881 aaKnown RBP27.13■■□□□ 1.93
CLN3-212ENST00000564574 RRP7AQ9Y3A4 280 aaKnown RBP27.13■■□□□ 1.93
CLN3-212ENST00000564574 NKX1-1Q15270 411 aaPredicted RBP27.12■■□□□ 1.93
CLN3-212ENST00000564574 NEUROD2Q15784 382 aa27.12■■□□□ 1.93
CLN3-212ENST00000564574 RGS12O14924 1447 aa27.12■■□□□ 1.93
CLN3-212ENST00000564574 RTF1Q92541 710 aaKnown RBP27.11■■□□□ 1.93
CLN3-212ENST00000564574 HNRNPUQ00839 825 aaKnown RBP eCLIP27.1■■□□□ 1.93
CLN3-212ENST00000564574 MARCH10Q8NA82 808 aaPredicted RBP27.09■■□□□ 1.93
CLN3-212ENST00000564574 UPF1Q92900 1129 aaKnown RBP eCLIP27.09■■□□□ 1.93
CLN3-212ENST00000564574 DCAF5Q96JK2 942 aa27.09■■□□□ 1.93
CLN3-212ENST00000564574 TRIM35Q9UPQ4 493 aa27.08■■□□□ 1.93
CLN3-212ENST00000564574 KRT27Q7Z3Y8 459 aa27.06■■□□□ 1.92
CLN3-212ENST00000564574 BCL9O00512 1426 aa27.06■■□□□ 1.92
CLN3-212ENST00000564574 KDM6AO15550 1401 aaPredicted RBP27.06■■□□□ 1.92
CLN3-212ENST00000564574 DOT1LQ8TEK3 1739 aa27.05■■□□□ 1.92
CLN3-212ENST00000564574 TOGARAM1Q9Y4F4 1720 aa27.05■■□□□ 1.92
CLN3-212ENST00000564574 RNMTO43148 476 aaKnown RBP27.05■■□□□ 1.92
CLN3-212ENST00000564574 MPRIPQ6WCQ1 1025 aa27.05■■□□□ 1.92
CLN3-212ENST00000564574 CEMIPQ8WUJ3 1361 aa27.05■■□□□ 1.92
CLN3-212ENST00000564574 WWC1Q8IX03 1113 aa27.04■■□□□ 1.92
CLN3-212ENST00000564574 SALL2Q9Y467 1007 aaPredicted RBP27.04■■□□□ 1.92
CLN3-212ENST00000564574 SENP3-EIF4A1A0A087X0R7 540 aa27.03■■□□□ 1.92
CLN3-212ENST00000564574 SIPA1L3O60292 1781 aaPredicted RBP27.03■■□□□ 1.92
CLN3-212ENST00000564574 ITGB4P16144 1822 aa27.03■■□□□ 1.92
CLN3-212ENST00000564574 MRC1P22897 1456 aa27.03■■□□□ 1.92
CLN3-212ENST00000564574 CALD1Q05682 793 aaKnown RBP27.03■■□□□ 1.92
CLN3-212ENST00000564574 IL17REQ8NFR9 667 aa27.03■■□□□ 1.92
CLN3-212ENST00000564574 MCM10Q7L590 875 aa27.02■■□□□ 1.92
CLN3-212ENST00000564574 ZBED9Q6R2W3 1325 aa27.01■■□□□ 1.91
CLN3-212ENST00000564574 ERVV-2B6SEH9 535 aa27.01■■□□□ 1.91
CLN3-212ENST00000564574 LGR6Q9HBX8 967 aa27.01■■□□□ 1.91
CLN3-212ENST00000564574 SBF2Q86WG5 1849 aa27.01■■□□□ 1.91
CLN3-212ENST00000564574 ZNF521Q96K83 1311 aa27■■□□□ 1.91
CLN3-212ENST00000564574 DCTN1Q14203 1278 aa27■■□□□ 1.91
CLN3-212ENST00000564574 WDR63Q8IWG1 891 aa27■■□□□ 1.91
CLN3-212ENST00000564574 KAT6BQ8WYB5 2073 aa27■■□□□ 1.91
CLN3-212ENST00000564574 TEFQ10587 303 aa26.98■■□□□ 1.91
CLN3-212ENST00000564574 NHSQ6T4R5 1651 aa26.98■■□□□ 1.91
CLN3-212ENST00000564574 IL16Q14005 1332 aa26.97■■□□□ 1.91
CLN3-212ENST00000564574 FAM196AQ6ZSG2 479 aa26.97■■□□□ 1.91
CLN3-212ENST00000564574 YTHDC1Q96MU7 727 aaKnown RBP26.96■■□□□ 1.91
CLN3-212ENST00000564574 THUMPD2Q9BTF0 503 aaKnown RBP26.96■■□□□ 1.91
CLN3-212ENST00000564574 SLC52A2Q9HAB3 445 aa26.96■■□□□ 1.91
CLN3-212ENST00000564574 CABP4P57796 275 aa26.95■■□□□ 1.9
CLN3-212ENST00000564574 BABAM1Q9NWV8 329 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms