RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CBLBQ13191 982 aa9.07□□□□□ -0.96
VPS35-205ENST00000563984 GAS6Q14393 721 aa9.07□□□□□ -0.96
VPS35-205ENST00000563984 Q6ZVU0 165 aa9.07□□□□□ -0.96
VPS35-205ENST00000563984 CCDC116Q8IYX3 515 aa9.07□□□□□ -0.96
VPS35-205ENST00000563984 GJD4Q96KN9 370 aaPredicted RBP9.07□□□□□ -0.96
VPS35-205ENST00000563984 MAP4K5Q9Y4K4 846 aa9.07□□□□□ -0.96
VPS35-205ENST00000563984 ZBTB33Q86T24 672 aa9.06□□□□□ -0.96
VPS35-205ENST00000563984 ENAMQ9NRM1 1142 aa9.06□□□□□ -0.96
VPS35-205ENST00000563984 SENP3-EIF4A1A0A087X0R7 540 aa9.05□□□□□ -0.96
VPS35-205ENST00000563984 BEND7Q8N7W2 519 aaPredicted RBP9.04□□□□□ -0.96
VPS35-205ENST00000563984 CDV3Q9UKY7 258 aaKnown RBP9.04□□□□□ -0.96
VPS35-205ENST00000563984 CTSOP43234 321 aaPredicted RBP9.03□□□□□ -0.96
VPS35-205ENST00000563984 MTMR14Q8NCE2 650 aa9.03□□□□□ -0.96
VPS35-205ENST00000563984 SNRKQ9NRH2 765 aa9.03□□□□□ -0.96
VPS35-205ENST00000563984 BAG6P46379 1132 aa9.02□□□□□ -0.97
VPS35-205ENST00000563984 PPP1R26Q5T8A7 1209 aaPredicted RBP9.02□□□□□ -0.97
VPS35-205ENST00000563984 SLC10A4Q96EP9 437 aa9.02□□□□□ -0.97
VPS35-205ENST00000563984 OCSTAMPQ9BR26 566 aa9.02□□□□□ -0.97
VPS35-205ENST00000563984 TMEM132AQ24JP5 1023 aa9.01□□□□□ -0.97
VPS35-205ENST00000563984 ADAM32Q8TC27 787 aa9.01□□□□□ -0.97
VPS35-205ENST00000563984 NDUFB9Q9Y6M9 179 aa9.01□□□□□ -0.97
VPS35-205ENST00000563984 RAB15P59190 212 aa9□□□□□ -0.97
VPS35-205ENST00000563984 KCTD15Q96SI1 283 aaPredicted RBP9□□□□□ -0.97
VPS35-205ENST00000563984 PRM3Q9NNZ6 103 aa9□□□□□ -0.97
VPS35-205ENST00000563984 CUEDC1Q9NWM3 386 aaPredicted RBP9□□□□□ -0.97
VPS35-205ENST00000563984 ZBBXA8MT70 800 aa8.99□□□□□ -0.97
VPS35-205ENST00000563984 AGBL1Q96MI9 1066 aa8.98□□□□□ -0.97
VPS35-205ENST00000563984 INSM2Q96T92 566 aaPredicted RBP8.98□□□□□ -0.97
VPS35-205ENST00000563984 PGPEP1Q9NXJ5 209 aa8.98□□□□□ -0.97
VPS35-205ENST00000563984 FURINP09958 794 aa8.97□□□□□ -0.97
VPS35-205ENST00000563984 INTS6LQ5JSJ4 861 aaKnown RBP8.97□□□□□ -0.97
VPS35-205ENST00000563984 PODNQ7Z5L7 613 aa8.97□□□□□ -0.97
VPS35-205ENST00000563984 DZIP3Q86Y13 1208 aaKnown RBP8.97□□□□□ -0.97
VPS35-205ENST00000563984 RNF217Q8TC41 542 aa8.97□□□□□ -0.97
VPS35-205ENST00000563984 KRBA1A5PL33 1030 aa8.96□□□□□ -0.98
VPS35-205ENST00000563984 BCRP11274 1271 aa8.96□□□□□ -0.98
VPS35-205ENST00000563984 NBPF20Q3BBV1 942 aa8.96□□□□□ -0.98
VPS35-205ENST00000563984 NEDD1Q8NHV4 660 aa8.96□□□□□ -0.98
VPS35-205ENST00000563984 FBXO45P0C2W1 286 aa8.95□□□□□ -0.98
VPS35-205ENST00000563984 ZNF592Q92610 1267 aa8.95□□□□□ -0.98
VPS35-205ENST00000563984 TMPRSS4Q9NRS4 437 aa8.95□□□□□ -0.98
VPS35-205ENST00000563984 MBIPQ9NS73 344 aa8.95□□□□□ -0.98
VPS35-205ENST00000563984 ZNF330Q9Y3S2 320 aaPredicted RBP8.95□□□□□ -0.98
VPS35-205ENST00000563984 GPR37L1O60883 481 aa8.94□□□□□ -0.98
VPS35-205ENST00000563984 MCCD1P59942 119 aaPredicted RBP8.94□□□□□ -0.98
VPS35-205ENST00000563984 RELBQ01201 579 aa8.94□□□□□ -0.98
VPS35-205ENST00000563984 DHX9Q08211 1270 aaKnown RBP8.94□□□□□ -0.98
VPS35-205ENST00000563984 NR1H3Q13133 447 aa8.94□□□□□ -0.98
VPS35-205ENST00000563984 LCE3BQ5TA77 95 aa8.94□□□□□ -0.98
VPS35-205ENST00000563984 POLMQ9NP87 494 aaPredicted RBP8.94□□□□□ -0.98
VPS35-205ENST00000563984 IGF1RP08069 1367 aa8.94□□□□□ -0.98
VPS35-205ENST00000563984 MCM6Q14566 821 aa8.93□□□□□ -0.98
VPS35-205ENST00000563984 ACDQ96AP0 544 aa8.93□□□□□ -0.98
VPS35-205ENST00000563984 KRTAP4-12Q9BQ66 201 aa8.92□□□□□ -0.98
VPS35-205ENST00000563984 TBC1D2BQ9UPU7 963 aa8.92□□□□□ -0.98
VPS35-205ENST00000563984 ESPNB1AK53 854 aa8.91□□□□□ -0.98
VPS35-205ENST00000563984 SEPT12Q8IYM1 358 aa8.91□□□□□ -0.98
VPS35-205ENST00000563984 ZNF395Q9H8N7 513 aaPredicted RBP8.91□□□□□ -0.98
VPS35-205ENST00000563984 PCDHB9Q9Y5E1 797 aa8.91□□□□□ -0.98
VPS35-205ENST00000563984 GPR25O00155 361 aa8.9□□□□□ -0.98
VPS35-205ENST00000563984 FOXD4L5Q5VV16 416 aaPredicted RBP8.9□□□□□ -0.98
VPS35-205ENST00000563984 FLIIQ13045 1269 aa8.89□□□□□ -0.99
VPS35-205ENST00000563984 CCDC125Q86Z20 511 aa8.89□□□□□ -0.99
VPS35-205ENST00000563984 ZNF784Q8NCA9 323 aaPredicted RBP8.89□□□□□ -0.99
VPS35-205ENST00000563984 TRIM52Q96A61 297 aa8.89□□□□□ -0.99
VPS35-205ENST00000563984 ZNF837Q96EG3 531 aaPredicted RBP8.89□□□□□ -0.99
VPS35-205ENST00000563984 ERVH48-1M5A8F1 160 aa8.88□□□□□ -0.99
VPS35-205ENST00000563984 SNRPNP63162 240 aaKnown RBP8.88□□□□□ -0.99
VPS35-205ENST00000563984 ERICH6Q7L0X2 663 aa8.88□□□□□ -0.99
VPS35-205ENST00000563984 LRRC4BQ9NT99 713 aa8.88□□□□□ -0.99
VPS35-205ENST00000563984 ITGB7P26010 798 aa8.87□□□□□ -0.99
VPS35-205ENST00000563984 RNF20Q5VTR2 975 aa8.87□□□□□ -0.99
VPS35-205ENST00000563984 GDPD2Q9HCC8 539 aa8.87□□□□□ -0.99
VPS35-205ENST00000563984 ADD1P35611 737 aaKnown RBP8.86□□□□□ -0.99
VPS35-205ENST00000563984 IRF5Q13568 498 aa8.86□□□□□ -0.99
VPS35-205ENST00000563984 CYLDQ9NQC7 956 aa8.86□□□□□ -0.99
VPS35-205ENST00000563984 COL8A1P27658 744 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 ABL2P42684 1182 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 EIF4G2P78344 907 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS35-205ENST00000563984 DBN1Q16643 649 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 WASHC4Q2M389 1173 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 TRIM22Q8IYM9 498 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 GMCL1Q96IK5 515 aa8.85□□□□□ -0.99
VPS35-205ENST00000563984 OIP5O43482 229 aa8.84□□□□□ -0.99
VPS35-205ENST00000563984 GIGYF1O75420 1035 aaPredicted RBP8.84□□□□□ -0.99
VPS35-205ENST00000563984 LYSMD3Q7Z3D4 306 aa8.84□□□□□ -0.99
VPS35-205ENST00000563984 KDF1Q8NAX2 398 aaPredicted RBP8.84□□□□□ -0.99
VPS35-205ENST00000563984 COG6Q9Y2V7 657 aa8.84□□□□□ -0.99
VPS35-205ENST00000563984 LILRA1O75019 489 aa8.83□□□□□ -1
VPS35-205ENST00000563984 KRTAP9-9Q9BYP9 154 aa8.83□□□□□ -1
VPS35-205ENST00000563984 KRTAP9-4Q9BYQ2 154 aa8.83□□□□□ -1
VPS35-205ENST00000563984 RAD21O60216 631 aa8.82□□□□□ -1
VPS35-205ENST00000563984 ADH1AP07327 375 aa8.82□□□□□ -1
VPS35-205ENST00000563984 FOXR1Q6PIV2 292 aa8.81□□□□□ -1
VPS35-205ENST00000563984 ALYREFQ86V81 257 aaKnown RBP8.81□□□□□ -1
VPS35-205ENST00000563984 WWC1Q8IX03 1113 aa8.81□□□□□ -1
VPS35-205ENST00000563984 CEP126Q9P2H0 1117 aa8.81□□□□□ -1
VPS35-205ENST00000563984 RHOQP17081 205 aa8.8□□□□□ -1
VPS35-205ENST00000563984 UBTFP17480 764 aaKnown RBP8.8□□□□□ -1
VPS35-205ENST00000563984 PTGIRP43119 386 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms