RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 CHMP3Q9Y3E7 222 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 HFM1A2PYH4 1435 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 KIF5BP33176 963 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 FAM114A1Q8IWE2 563 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 SECISBP2LQ93073 1101 aaKnown RBP7.32□□□□□ -1.24
CLK3-212ENST00000563418 KIF3BO15066 747 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 UPF3BQ9BZI7 483 aaKnown RBP7.32□□□□□ -1.24
CLK3-212ENST00000563418 CEP89Q96ST8 783 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 FGD6Q6ZV73 1430 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 SSFA2P28290 1259 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 OTUD6BQ8N6M0 293 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 TCHPQ9BT92 498 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 IRX5P78411 483 aaPredicted RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 MVPQ14764 893 aaKnown RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 PPFIBP1Q86W92 1011 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 ANKS4BQ8N8V4 417 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 RUNDC1Q96C34 613 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 ZSCAN31Q96LW9 406 aaPredicted RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 LNPKQ9C0E8 428 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 TUBB2AQ13885 445 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 RNF187Q5TA31 235 aaPredicted RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 GOLGA1Q92805 767 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 TUBB2BQ9BVA1 445 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 SERPINC1P01008 464 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 SEPT6Q14141 434 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 ANO10Q9NW15 660 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 SLC8A1P32418 973 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 ARHGAP29Q52LW3 1261 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 APBB1O00213 710 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 RIOK3O14730 519 aaKnown RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 OPA1O60313 960 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 NEDD9Q14511 834 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 JMYQ8N9B5 988 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 CASTP20810 708 aaKnown RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 VEZTQ9HBM0 779 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 LUC7L3O95232 432 aaKnown RBP7.31□□□□□ -1.24
CLK3-212ENST00000563418 INPP5BP32019 993 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 ODF2Q5BJF6 829 aa7.31□□□□□ -1.24
CLK3-212ENST00000563418 URI1O94763 535 aaPredicted RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 MCTP2Q6DN12 878 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 CEP57Q86XR8 500 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 PKD2Q13563 968 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 SKIDA1Q1XH10 827 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 NBPF6Q5VWK0 638 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 CCDC121Q6ZUS5 278 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 NBPF5PQ86XG9 351 aaPredicted RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 NBPF4Q96M43 638 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 PPP6R1Q9UPN7 881 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 ST20-MTHFSA0A0A6YYL1 179 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 IRX1P78414 480 aaPredicted RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 CCDC30Q5VVM6 783 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 EHBP1Q8NDI1 1231 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 ZNHIT6Q9NWK9 470 aaKnown RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 RGL3Q3MIN7 710 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 PANK3Q9H999 370 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 TIAM1Q13009 1591 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 GCKP35557 465 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 STX1AQ16623 288 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 WIZO95785 1651 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 PPFIA3O75145 1194 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.3□□□□□ -1.24
CLK3-212ENST00000563418 NCOA2Q15596 1464 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 MX1P20591 662 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 CPLX2Q6PUV4 134 aaKnown RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 RPUSD2Q8IZ73 545 aaKnown RBP7.3□□□□□ -1.24
CLK3-212ENST00000563418 SPATA32Q96LK8 384 aa7.3□□□□□ -1.24
CLK3-212ENST00000563418 TXLNAP40222 546 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 PRIM1P49642 420 aaKnown RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 BMP2KLQ5H9B9 411 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 SYNE3Q6ZMZ3 975 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 CHD1LQ86WJ1 897 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 ZNF428Q96B54 188 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 INSRP06213 1382 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 TERF2Q15554 542 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 DBN1Q16643 649 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 CCDC181Q5TID7 509 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 MMS22LQ6ZRQ5 1243 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 CLASRPQ8N2M8 674 aaKnown RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 CCDC47Q96A33 483 aaKnown RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 ANKRD36BQ8N2N9 1353 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 HMGB1P1B2RPK0 211 aaPredicted RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 RILPL2Q969X0 211 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 CCDC175P0C221 793 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 PIP4K2BP78356 416 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 FKBP5Q13451 457 aaPredicted RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 VPS18Q9P253 973 aa7.29□□□□□ -1.24
CLK3-212ENST00000563418 RRP15Q9Y3B9 282 aaKnown RBP7.29□□□□□ -1.24
CLK3-212ENST00000563418 SH3GL3Q99963 347 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 NBPF3Q9H094 633 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 MYOM3Q5VTT5 1437 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 APAF1O14727 1248 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 IGSF3O75054 1194 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 MAGEA9P43362 315 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 LRRFIP1Q32MZ4 808 aaKnown RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 FAM76AQ8TAV0 307 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 GTF3C6Q969F1 213 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 PPP2R5AQ15172 486 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 PDCD2Q16342 344 aaPredicted RBP7.28□□□□□ -1.24
CLK3-212ENST00000563418 CDCA7LQ96GN5 454 aa7.28□□□□□ -1.24
CLK3-212ENST00000563418 HIP1O00291 1037 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms