RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 THRAP3Q9Y2W1 955 aaKnown RBP21.98■■□□□ 1.11
VPS4A-202ENST00000562754 MAPK8IP3Q9UPT6 1336 aa21.98■■□□□ 1.11
VPS4A-202ENST00000562754 SENP3-EIF4A1A0A087X0R7 540 aa21.97■■□□□ 1.11
VPS4A-202ENST00000562754 RGS17Q9UGC6 210 aaPredicted RBP21.97■■□□□ 1.11
VPS4A-202ENST00000562754 APAF1O14727 1248 aa21.96■■□□□ 1.11
VPS4A-202ENST00000562754 ZNF772Q68DY9 489 aaPredicted RBP21.96■■□□□ 1.11
VPS4A-202ENST00000562754 BARGINQ6ZT62 677 aa21.96■■□□□ 1.11
VPS4A-202ENST00000562754 GJD4Q96KN9 370 aaPredicted RBP21.96■■□□□ 1.11
VPS4A-202ENST00000562754 QTRT2Q9H974 415 aaKnown RBP21.96■■□□□ 1.11
VPS4A-202ENST00000562754 MTHFSDQ2M296 383 aaKnown RBP21.94■■□□□ 1.1
VPS4A-202ENST00000562754 TNS2Q63HR2 1409 aa21.94■■□□□ 1.1
VPS4A-202ENST00000562754 NEFMP07197 916 aa21.93■■□□□ 1.1
VPS4A-202ENST00000562754 NFE2L2Q16236 605 aa21.93■■□□□ 1.1
VPS4A-202ENST00000562754 FAM98CQ17RN3 349 aaKnown RBP21.93■■□□□ 1.1
VPS4A-202ENST00000562754 RRP7AQ9Y3A4 280 aaKnown RBP21.93■■□□□ 1.1
VPS4A-202ENST00000562754 TMPOP42166 694 aaKnown RBP21.92■■□□□ 1.1
VPS4A-202ENST00000562754 PLEKHO1Q53GL0 409 aaPredicted RBP21.92■■□□□ 1.1
VPS4A-202ENST00000562754 AMOTQ4VCS5 1084 aa21.91■■□□□ 1.1
VPS4A-202ENST00000562754 CDCA7Q9BWT1 371 aaPredicted RBP21.91■■□□□ 1.1
VPS4A-202ENST00000562754 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.91■■□□□ 1.1
VPS4A-202ENST00000562754 HNRNPUQ00839 825 aaKnown RBP eCLIP21.9■■□□□ 1.1
VPS4A-202ENST00000562754 ZNF530Q6P9A1 599 aaPredicted RBP21.9■■□□□ 1.1
VPS4A-202ENST00000562754 GAS2L2Q8NHY3 880 aa21.9■■□□□ 1.1
VPS4A-202ENST00000562754 PHF23Q9BUL5 403 aaPredicted RBP21.9■■□□□ 1.1
VPS4A-202ENST00000562754 VIRMAQ69YN4 1812 aaKnown RBP21.9■■□□□ 1.1
VPS4A-202ENST00000562754 ZCRB1Q8TBF4 217 aaKnown RBP21.89■■□□□ 1.09
VPS4A-202ENST00000562754 SPG7Q9UQ90 795 aa21.89■■□□□ 1.09
VPS4A-202ENST00000562754 ADAMTS7Q9UKP4 1686 aa21.88■■□□□ 1.09
VPS4A-202ENST00000562754 NEUROD2Q15784 382 aa21.88■■□□□ 1.09
VPS4A-202ENST00000562754 POTEAQ6S8J7 498 aa21.88■■□□□ 1.09
VPS4A-202ENST00000562754 YTHDC1Q96MU7 727 aaKnown RBP21.88■■□□□ 1.09
VPS4A-202ENST00000562754 MAP3K5Q99683 1374 aa21.87■■□□□ 1.09
VPS4A-202ENST00000562754 CYP27B1O15528 508 aa21.87■■□□□ 1.09
VPS4A-202ENST00000562754 PCDH11XQ9BZA7 1347 aa21.86■■□□□ 1.09
VPS4A-202ENST00000562754 PCDH11YQ9BZA8 1340 aa21.86■■□□□ 1.09
VPS4A-202ENST00000562754 ONECUT3O60422 494 aaPredicted RBP21.86■■□□□ 1.09
VPS4A-202ENST00000562754 RIPK4P57078 832 aa21.86■■□□□ 1.09
VPS4A-202ENST00000562754 RBM6P78332 1123 aaKnown RBP21.86■■□□□ 1.09
VPS4A-202ENST00000562754 SALL2Q9Y467 1007 aaPredicted RBP21.86■■□□□ 1.09
VPS4A-202ENST00000562754 BRWD3Q6RI45 1802 aa21.85■■□□□ 1.09
VPS4A-202ENST00000562754 PHKG2P15735 406 aa21.85■■□□□ 1.09
VPS4A-202ENST00000562754 TRIM35Q9UPQ4 493 aa21.85■■□□□ 1.09
VPS4A-202ENST00000562754 SCN11AQ9UI33 1791 aa21.84■■□□□ 1.09
VPS4A-202ENST00000562754 TOGARAM1Q9Y4F4 1720 aa21.84■■□□□ 1.09
VPS4A-202ENST00000562754 KDM6AO15550 1401 aaPredicted RBP21.84■■□□□ 1.09
VPS4A-202ENST00000562754 DDB1Q16531 1140 aa21.84■■□□□ 1.09
VPS4A-202ENST00000562754 AKAP4Q5JQC9 854 aa21.84■■□□□ 1.09
VPS4A-202ENST00000562754 A0A0G2JS52 829 aa21.83■■□□□ 1.09
VPS4A-202ENST00000562754 EXOC5O00471 708 aa21.83■■□□□ 1.09
VPS4A-202ENST00000562754 MYT1Q01538 1121 aa21.83■■□□□ 1.09
VPS4A-202ENST00000562754 NCBP3Q53F19 620 aaKnown RBP21.83■■□□□ 1.09
VPS4A-202ENST00000562754 C1orf141Q5JVX7 400 aa21.83■■□□□ 1.09
VPS4A-202ENST00000562754 GNAT3A8MTJ3 354 aa21.82■■□□□ 1.08
VPS4A-202ENST00000562754 CCDC27Q2M243 656 aa21.82■■□□□ 1.08
VPS4A-202ENST00000562754 SEPT12Q8IYM1 358 aa21.82■■□□□ 1.08
VPS4A-202ENST00000562754 IFNL2Q8IZJ0 200 aa21.82■■□□□ 1.08
VPS4A-202ENST00000562754 NGEFQ8N5V2 710 aa21.82■■□□□ 1.08
VPS4A-202ENST00000562754 ZNF521Q96K83 1311 aa21.81■■□□□ 1.08
VPS4A-202ENST00000562754 RGS12O14924 1447 aa21.81■■□□□ 1.08
VPS4A-202ENST00000562754 RXRBP28702 533 aa21.81■■□□□ 1.08
VPS4A-202ENST00000562754 DDX54Q8TDD1 881 aaKnown RBP21.81■■□□□ 1.08
VPS4A-202ENST00000562754 ZBED9Q6R2W3 1325 aa21.8■■□□□ 1.08
VPS4A-202ENST00000562754 DCTN1Q14203 1278 aa21.8■■□□□ 1.08
VPS4A-202ENST00000562754 WWC1Q8IX03 1113 aa21.8■■□□□ 1.08
VPS4A-202ENST00000562754 MARCH10Q8NA82 808 aaPredicted RBP21.8■■□□□ 1.08
VPS4A-202ENST00000562754 THUMPD2Q9BTF0 503 aaKnown RBP21.8■■□□□ 1.08
VPS4A-202ENST00000562754 DOT1LQ8TEK3 1739 aa21.8■■□□□ 1.08
VPS4A-202ENST00000562754 HTATSF1O43719 755 aaKnown RBP21.79■■□□□ 1.08
VPS4A-202ENST00000562754 LMOD3Q0VAK6 560 aa21.79■■□□□ 1.08
VPS4A-202ENST00000562754 MCM10Q7L590 875 aa21.79■■□□□ 1.08
VPS4A-202ENST00000562754 SIPA1L3O60292 1781 aaPredicted RBP21.79■■□□□ 1.08
VPS4A-202ENST00000562754 MRC1P22897 1456 aa21.78■■□□□ 1.08
VPS4A-202ENST00000562754 CEMIPQ8WUJ3 1361 aa21.78■■□□□ 1.08
VPS4A-202ENST00000562754 NKX1-1Q15270 411 aaPredicted RBP21.78■■□□□ 1.08
VPS4A-202ENST00000562754 MPRIPQ6WCQ1 1025 aa21.78■■□□□ 1.08
VPS4A-202ENST00000562754 IL17REQ8NFR9 667 aa21.78■■□□□ 1.08
VPS4A-202ENST00000562754 RNMTO43148 476 aaKnown RBP21.77■■□□□ 1.08
VPS4A-202ENST00000562754 LGR6Q9HBX8 967 aa21.77■■□□□ 1.08
VPS4A-202ENST00000562754 RTF1Q92541 710 aaKnown RBP21.76■■□□□ 1.07
VPS4A-202ENST00000562754 HSP90AB1P08238 724 aaKnown RBP21.75■■□□□ 1.07
VPS4A-202ENST00000562754 DCAF5Q96JK2 942 aa21.75■■□□□ 1.07
VPS4A-202ENST00000562754 ITGB4P16144 1822 aa21.75■■□□□ 1.07
VPS4A-202ENST00000562754 PDE3BQ13370 1112 aa21.74■■□□□ 1.07
VPS4A-202ENST00000562754 FAM182BQ5T319 152 aa21.71■■□□□ 1.07
VPS4A-202ENST00000562754 WDR63Q8IWG1 891 aa21.71■■□□□ 1.07
VPS4A-202ENST00000562754 SPINK5Q9NQ38 1064 aaPredicted RBP21.71■■□□□ 1.07
VPS4A-202ENST00000562754 SBF2Q86WG5 1849 aa21.71■■□□□ 1.07
VPS4A-202ENST00000562754 BCL9O00512 1426 aa21.71■■□□□ 1.07
VPS4A-202ENST00000562754 KDM3BQ7LBC6 1761 aa21.7■■□□□ 1.06
VPS4A-202ENST00000562754 KRT27Q7Z3Y8 459 aa21.7■■□□□ 1.06
VPS4A-202ENST00000562754 NHSQ6T4R5 1651 aa21.69■■□□□ 1.06
VPS4A-202ENST00000562754 CDCA7LQ96GN5 454 aa21.69■■□□□ 1.06
VPS4A-202ENST00000562754 IL16Q14005 1332 aa21.69■■□□□ 1.06
VPS4A-202ENST00000562754 PAPPAQ13219 1627 aa21.69■■□□□ 1.06
VPS4A-202ENST00000562754 GOLGA2Q08379 1002 aa21.68■■□□□ 1.06
VPS4A-202ENST00000562754 SLC52A2Q9HAB3 445 aa21.68■■□□□ 1.06
VPS4A-202ENST00000562754 KAT6BQ8WYB5 2073 aa21.68■■□□□ 1.06
VPS4A-202ENST00000562754 ERVV-2B6SEH9 535 aa21.67■■□□□ 1.06
VPS4A-202ENST00000562754 ZNF853P0CG23 659 aa21.67■■□□□ 1.06
VPS4A-202ENST00000562754 CALD1Q05682 793 aaKnown RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms