RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 SUZ12Q15022 739 aaKnown RBP9.62□□□□□ -0.87
VPS13C-210ENST00000561258 TRIM34Q9BYJ4 488 aa9.62□□□□□ -0.87
VPS13C-210ENST00000561258 ARHGEF15O94989 841 aa9.61□□□□□ -0.87
VPS13C-210ENST00000561258 RNF225M0QZC1 329 aaPredicted RBP9.6□□□□□ -0.87
VPS13C-210ENST00000561258 RHOQP17081 205 aa9.6□□□□□ -0.87
VPS13C-210ENST00000561258 LYSMD3Q7Z3D4 306 aa9.6□□□□□ -0.87
VPS13C-210ENST00000561258 PRICKLE2Q7Z3G6 844 aa9.6□□□□□ -0.87
VPS13C-210ENST00000561258 ADAMTS2O95450 1211 aa9.59□□□□□ -0.87
VPS13C-210ENST00000561258 SUPT5HO00267 1087 aaKnown RBP9.58□□□□□ -0.88
VPS13C-210ENST00000561258 IRS1P35568 1242 aa9.58□□□□□ -0.88
VPS13C-210ENST00000561258 GAS6Q14393 721 aa9.58□□□□□ -0.88
VPS13C-210ENST00000561258 LYPD4Q6UWN0 246 aa9.58□□□□□ -0.88
VPS13C-210ENST00000561258 GIGYF1O75420 1035 aaPredicted RBP9.57□□□□□ -0.88
VPS13C-210ENST00000561258 RNF144AP50876 292 aaPredicted RBP9.56□□□□□ -0.88
VPS13C-210ENST00000561258 SEPT12Q8IYM1 358 aa9.56□□□□□ -0.88
VPS13C-210ENST00000561258 IL27Q8NEV9 243 aa9.56□□□□□ -0.88
VPS13C-210ENST00000561258 PCDHB9Q9Y5E1 797 aa9.56□□□□□ -0.88
VPS13C-210ENST00000561258 MARSP56192 900 aaKnown RBP9.55□□□□□ -0.88
VPS13C-210ENST00000561258 ZBBXA8MT70 800 aa9.54□□□□□ -0.88
VPS13C-210ENST00000561258 ATP5J2-PTCD1G3V325 749 aa9.54□□□□□ -0.88
VPS13C-210ENST00000561258 MEN1O00255 615 aa9.54□□□□□ -0.88
VPS13C-210ENST00000561258 FBXO45P0C2W1 286 aa9.54□□□□□ -0.88
VPS13C-210ENST00000561258 SRSF11Q05519 484 aaKnown RBP9.54□□□□□ -0.88
VPS13C-210ENST00000561258 GPR25O00155 361 aa9.53□□□□□ -0.88
VPS13C-210ENST00000561258 ZNF837Q96EG3 531 aaPredicted RBP9.53□□□□□ -0.88
VPS13C-210ENST00000561258 CELA2BP08218 269 aaPredicted RBP9.52□□□□□ -0.89
VPS13C-210ENST00000561258 TMEM259Q4ZIN3 620 aa9.52□□□□□ -0.89
VPS13C-210ENST00000561258 GJD4Q96KN9 370 aaPredicted RBP9.52□□□□□ -0.89
VPS13C-210ENST00000561258 PCMTD1Q96MG8 357 aaPredicted RBP9.52□□□□□ -0.89
VPS13C-210ENST00000561258 A0A1W2PRU2 124 aa9.51□□□□□ -0.89
VPS13C-210ENST00000561258 DBN1Q16643 649 aa9.51□□□□□ -0.89
VPS13C-210ENST00000561258 RIPOR1Q6ZS17 1223 aa9.51□□□□□ -0.89
VPS13C-210ENST00000561258 MAP3K10Q02779 954 aa9.5□□□□□ -0.89
VPS13C-210ENST00000561258 GPAT2Q6NUI2 795 aa9.5□□□□□ -0.89
VPS13C-210ENST00000561258 TRIM22Q8IYM9 498 aa9.5□□□□□ -0.89
VPS13C-210ENST00000561258 DNMT3AQ9Y6K1 912 aaPredicted RBP9.5□□□□□ -0.89
VPS13C-210ENST00000561258 ERVK-9P63128 1117 aa9.49□□□□□ -0.89
VPS13C-210ENST00000561258 POU4F2Q12837 409 aa9.49□□□□□ -0.89
VPS13C-210ENST00000561258 SCARF2Q96GP6 870 aaPredicted RBP9.49□□□□□ -0.89
VPS13C-210ENST00000561258 GOPCQ9HD26 462 aa9.49□□□□□ -0.89
VPS13C-210ENST00000561258 GPC1P35052 558 aa9.48□□□□□ -0.89
VPS13C-210ENST00000561258 SCTRP47872 440 aa9.48□□□□□ -0.89
VPS13C-210ENST00000561258 CC2D2BQ6DHV5 1058 aa9.48□□□□□ -0.89
VPS13C-210ENST00000561258 GAS2L1Q99501 681 aaPredicted RBP9.48□□□□□ -0.89
VPS13C-210ENST00000561258 MBIPQ9NS73 344 aa9.48□□□□□ -0.89
VPS13C-210ENST00000561258 SLC27A3Q5K4L6 730 aa9.47□□□□□ -0.89
VPS13C-210ENST00000561258 KANK3Q6NY19 840 aa9.47□□□□□ -0.89
VPS13C-210ENST00000561258 IGF1RP08069 1367 aa9.47□□□□□ -0.89
VPS13C-210ENST00000561258 GTPBP3Q969Y2 492 aaKnown RBP9.46□□□□□ -0.9
VPS13C-210ENST00000561258 TRIM52Q96A61 297 aa9.46□□□□□ -0.9
VPS13C-210ENST00000561258 GMCL1Q96IK5 515 aa9.46□□□□□ -0.9
VPS13C-210ENST00000561258 NLRP3Q96P20 1036 aa9.46□□□□□ -0.9
VPS13C-210ENST00000561258 ZMYND15Q9H091 742 aa9.46□□□□□ -0.9
VPS13C-210ENST00000561258 DYRK1BQ9Y463 629 aa9.46□□□□□ -0.9
VPS13C-210ENST00000561258 GRIP2Q9C0E4 1043 aa9.45□□□□□ -0.9
VPS13C-210ENST00000561258 RNF20Q5VTR2 975 aa9.44□□□□□ -0.9
VPS13C-210ENST00000561258 NBPF10Q6P3W6 841 aaKnown RBP9.44□□□□□ -0.9
VPS13C-210ENST00000561258 FOXR1Q6PIV2 292 aa9.44□□□□□ -0.9
VPS13C-210ENST00000561258 NBPF15Q8N660 670 aa9.44□□□□□ -0.9
VPS13C-210ENST00000561258 PCDHB11Q9Y5F2 797 aa9.44□□□□□ -0.9
VPS13C-210ENST00000561258 CNTNAP5Q8WYK1 1306 aa9.44□□□□□ -0.9
VPS13C-210ENST00000561258 NR1H3Q13133 447 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 CLN3Q13286 438 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 CYP2U1Q7Z449 544 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 ACDQ96AP0 544 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 OSBPL3Q9H4L5 887 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 ARHGEF10LQ9HCE6 1279 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 ENAMQ9NRM1 1142 aa9.43□□□□□ -0.9
VPS13C-210ENST00000561258 CCDC125Q86Z20 511 aa9.42□□□□□ -0.9
VPS13C-210ENST00000561258 H7C1W4 665 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 TRAK2O60296 914 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 GPR37L1O60883 481 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 IGHA1P01876 353 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 BCRP11274 1271 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 RAB6BQ9NRW1 208 aa9.41□□□□□ -0.9
VPS13C-210ENST00000561258 SPATA31C2B4DYI2 1134 aa9.4□□□□□ -0.9
VPS13C-210ENST00000561258 NEDD1Q8NHV4 660 aa9.4□□□□□ -0.9
VPS13C-210ENST00000561258 TIMMDC1Q9NPL8 285 aa9.4□□□□□ -0.9
VPS13C-210ENST00000561258 MCCD1P59942 119 aaPredicted RBP9.39□□□□□ -0.91
VPS13C-210ENST00000561258 FOXK2Q01167 660 aa9.39□□□□□ -0.91
VPS13C-210ENST00000561258 TRERF1Q96PN7 1200 aa9.39□□□□□ -0.91
VPS13C-210ENST00000561258 WASLO00401 505 aaPredicted RBP9.38□□□□□ -0.91
VPS13C-210ENST00000561258 MX2P20592 715 aa9.38□□□□□ -0.91
VPS13C-210ENST00000561258 TAS1R3Q7RTX0 852 aa9.38□□□□□ -0.91
VPS13C-210ENST00000561258 NUCKS1Q9H1E3 243 aaKnown RBP9.38□□□□□ -0.91
VPS13C-210ENST00000561258 ESF1Q9H501 851 aaKnown RBP9.38□□□□□ -0.91
VPS13C-210ENST00000561258 F11P03951 625 aa9.37□□□□□ -0.91
VPS13C-210ENST00000561258 THBS1P07996 1170 aa9.37□□□□□ -0.91
VPS13C-210ENST00000561258 WDR44Q5JSH3 913 aa9.37□□□□□ -0.91
VPS13C-210ENST00000561258 MTMR14Q8NCE2 650 aa9.37□□□□□ -0.91
VPS13C-210ENST00000561258 DCAF5Q96JK2 942 aa9.37□□□□□ -0.91
VPS13C-210ENST00000561258 PHF20L1A8MW92 1017 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 IL2RAP01589 272 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 PHKA2P46019 1235 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 PLA2G4EQ3MJ16 856 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 BEND7Q8N7W2 519 aaPredicted RBP9.36□□□□□ -0.91
VPS13C-210ENST00000561258 CNKSR1Q969H4 720 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 CDCA7Q9BWT1 371 aaPredicted RBP9.36□□□□□ -0.91
VPS13C-210ENST00000561258 GPAMQ9HCL2 828 aa9.36□□□□□ -0.91
VPS13C-210ENST00000561258 ZNF330Q9Y3S2 320 aaPredicted RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms