RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 BTG4Q9NY30 223 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 CLEC11AQ9Y240 323 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 CRB1P82279 1406 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 WDR17Q8IZU2 1322 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 BCL9O00512 1426 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 FCHSD2O94868 740 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 GLI3P10071 1580 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 CCDC125Q86Z20 511 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 IP6K1Q92551 441 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 SPATA31A1Q5TZJ5 1347 aa8.5□□□□□ -1.05
SPG11-221ENST00000560299 FAM208AQ9UK61 1670 aaKnown RBP8.49□□□□□ -1.05
SPG11-221ENST00000560299 ZBTB7CA1YPR0 619 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 PLEKHG5O94827 1062 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 HOXC9P31274 260 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 IL13P35225 146 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 RUNDC1Q96C34 613 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 CARD10Q9BWT7 1032 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 ERBB3P21860 1342 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 ZBED9Q6R2W3 1325 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 MAPK8IP3Q9UPT6 1336 aa8.49□□□□□ -1.05
SPG11-221ENST00000560299 ZC3H6P61129 1189 aaKnown RBP8.48□□□□□ -1.05
SPG11-221ENST00000560299 EIF4A2Q14240 407 aaKnown RBP8.48□□□□□ -1.05
SPG11-221ENST00000560299 HSP90AB2PQ58FF8 381 aa8.48□□□□□ -1.05
SPG11-221ENST00000560299 ILDR2Q71H61 639 aa8.48□□□□□ -1.05
SPG11-221ENST00000560299 SPDYE1Q8NFV5 336 aaPredicted RBP8.48□□□□□ -1.05
SPG11-221ENST00000560299 THSD7AQ9UPZ6 1657 aa8.48□□□□□ -1.05
SPG11-221ENST00000560299 RGS12O14924 1447 aa8.47□□□□□ -1.05
SPG11-221ENST00000560299 NCAPD2Q15021 1401 aa8.47□□□□□ -1.05
SPG11-221ENST00000560299 COL3A1P02461 1466 aaPredicted RBP8.47□□□□□ -1.05
SPG11-221ENST00000560299 TCP11L2Q8N4U5 519 aa8.47□□□□□ -1.05
SPG11-221ENST00000560299 PLSCR2Q9NRY7 297 aa8.47□□□□□ -1.05
SPG11-221ENST00000560299 LTN1O94822 1766 aa8.47□□□□□ -1.05
SPG11-221ENST00000560299 EVA1CP58658 441 aa8.46□□□□□ -1.06
SPG11-221ENST00000560299 PDE3BQ13370 1112 aa8.46□□□□□ -1.06
SPG11-221ENST00000560299 CCDC146Q8IYE0 955 aa8.46□□□□□ -1.06
SPG11-221ENST00000560299 AXIN2Q9Y2T1 843 aa8.46□□□□□ -1.06
SPG11-221ENST00000560299 DISP2A7MBM2 1401 aa8.46□□□□□ -1.06
SPG11-221ENST00000560299 APAF1O14727 1248 aa8.45□□□□□ -1.06
SPG11-221ENST00000560299 SULT6B1Q6IMI4 303 aa8.45□□□□□ -1.06
SPG11-221ENST00000560299 LTV1Q96GA3 475 aaPredicted RBP8.45□□□□□ -1.06
SPG11-221ENST00000560299 EP400Q96L91 3159 aa8.45□□□□□ -1.06
SPG11-221ENST00000560299 PEAK1Q9H792 1746 aa8.45□□□□□ -1.06
SPG11-221ENST00000560299 PARP4Q9UKK3 1724 aaKnown RBP8.45□□□□□ -1.06
SPG11-221ENST00000560299 HMOX1P09601 288 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 CSB-PGBD3P0DP91 1061 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 PRKAR2BP31323 418 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 CHRNA2Q15822 529 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 LARP1Q6PKG0 1096 aaKnown RBP8.44□□□□□ -1.06
SPG11-221ENST00000560299 ANKRD24Q8TF21 1146 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 EYA1Q99502 592 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 RSPH6AQ9H0K4 717 aa8.44□□□□□ -1.06
SPG11-221ENST00000560299 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.44□□□□□ -1.06
SPG11-221ENST00000560299 SALL2Q9Y467 1007 aaPredicted RBP8.44□□□□□ -1.06
SPG11-221ENST00000560299 LMOD3Q0VAK6 560 aa8.43□□□□□ -1.06
SPG11-221ENST00000560299 CCDC27Q2M243 656 aa8.43□□□□□ -1.06
SPG11-221ENST00000560299 SEPT12Q8IYM1 358 aa8.43□□□□□ -1.06
SPG11-221ENST00000560299 PLEKHF1Q96S99 279 aa8.43□□□□□ -1.06
SPG11-221ENST00000560299 IGSF1Q8N6C5 1336 aa8.43□□□□□ -1.06
SPG11-221ENST00000560299 TMPOP42166 694 aaKnown RBP8.42□□□□□ -1.06
SPG11-221ENST00000560299 RIPK4P57078 832 aa8.42□□□□□ -1.06
SPG11-221ENST00000560299 CALD1Q05682 793 aaKnown RBP8.42□□□□□ -1.06
SPG11-221ENST00000560299 GOLGA2Q08379 1002 aa8.42□□□□□ -1.06
SPG11-221ENST00000560299 NEUROD2Q15784 382 aa8.42□□□□□ -1.06
SPG11-221ENST00000560299 TOM1L2Q6ZVM7 507 aa8.42□□□□□ -1.06
SPG11-221ENST00000560299 KRT27Q7Z3Y8 459 aa8.42□□□□□ -1.06
SPG11-221ENST00000560299 KDRP35968 1356 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 HMGB2P26583 209 aaKnown RBP8.41□□□□□ -1.06
SPG11-221ENST00000560299 NFE2L2Q16236 605 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 FAM196AQ6ZSG2 479 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 WDR63Q8IWG1 891 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 GAS2L2Q8NHY3 880 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 NLRP2Q9NX02 1062 aa8.41□□□□□ -1.06
SPG11-221ENST00000560299 WNK3Q9BYP7 1800 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 OVOS2A0A0G2JMS6 1433 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 TNS2Q63HR2 1409 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 IL2RBP14784 551 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 FAM98CQ17RN3 349 aaKnown RBP8.4□□□□□ -1.06
SPG11-221ENST00000560299 AMOTQ4VCS5 1084 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 NBPF6Q5VWK0 638 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 AEBP1Q8IUX7 1158 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 WWC1Q8IX03 1113 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 RAPGEF4Q8WZA2 1011 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 RTF1Q92541 710 aaKnown RBP8.4□□□□□ -1.06
SPG11-221ENST00000560299 UPF1Q92900 1129 aaKnown RBP eCLIP8.4□□□□□ -1.06
SPG11-221ENST00000560299 NBPF4Q96M43 638 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 STRN4Q9NRL3 753 aa8.4□□□□□ -1.06
SPG11-221ENST00000560299 RGPD1P0DJD0 1748 aa8.4□□□□□ -1.07
SPG11-221ENST00000560299 SENP3-EIF4A1A0A087X0R7 540 aa8.39□□□□□ -1.07
SPG11-221ENST00000560299 E9PSI1 815 aa8.39□□□□□ -1.07
SPG11-221ENST00000560299 DDB1Q16531 1140 aa8.39□□□□□ -1.07
SPG11-221ENST00000560299 PLEKHO1Q53GL0 409 aaPredicted RBP8.39□□□□□ -1.07
SPG11-221ENST00000560299 PHACTR3Q96KR7 559 aa8.39□□□□□ -1.07
SPG11-221ENST00000560299 RRP7AQ9Y3A4 280 aaKnown RBP8.39□□□□□ -1.07
SPG11-221ENST00000560299 CCDC9Q9Y3X0 531 aaKnown RBP8.39□□□□□ -1.07
SPG11-221ENST00000560299 RGPD5Q99666 1765 aa8.39□□□□□ -1.07
SPG11-221ENST00000560299 ZNF521Q96K83 1311 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 EXOC5O00471 708 aa8.38□□□□□ -1.07
SPG11-221ENST00000560299 HTATSF1O43719 755 aaKnown RBP8.38□□□□□ -1.07
SPG11-221ENST00000560299 TATP17735 454 aaPredicted RBP8.38□□□□□ -1.07
SPG11-221ENST00000560299 USHBP1Q8N6Y0 703 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms