RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 TATP17735 454 aaPredicted RBP29.19■■■□□ 2.26
SNX1-210ENST00000560260 KRT27Q7Z3Y8 459 aa29.18■■■□□ 2.26
SNX1-210ENST00000560260 NUDCQ9Y266 331 aa29.18■■■□□ 2.26
SNX1-210ENST00000560260 EP400Q96L91 3159 aa29.16■■■□□ 2.26
SNX1-210ENST00000560260 FAM182BQ5T319 152 aa29.16■■■□□ 2.26
SNX1-210ENST00000560260 EXOC5O00471 708 aa29.15■■■□□ 2.26
SNX1-210ENST00000560260 U2AF1L5P0DN76 240 aaPredicted RBP29.15■■■□□ 2.26
SNX1-210ENST00000560260 U2AF1Q01081 240 aaKnown RBP eCLIP29.15■■■□□ 2.26
SNX1-210ENST00000560260 RSPH6AQ9H0K4 717 aa29.15■■■□□ 2.26
SNX1-210ENST00000560260 MARCH10Q8NA82 808 aaPredicted RBP29.14■■■□□ 2.25
SNX1-210ENST00000560260 ZCRB1Q8TBF4 217 aaKnown RBP29.14■■■□□ 2.25
SNX1-210ENST00000560260 PLEKHG2Q9H7P9 1386 aa29.13■■■□□ 2.25
SNX1-210ENST00000560260 PDE3BQ13370 1112 aa29.13■■■□□ 2.25
SNX1-210ENST00000560260 PRKAR2BP31323 418 aa29.09■■■□□ 2.25
SNX1-210ENST00000560260 CYP27B1O15528 508 aa29.08■■■□□ 2.25
SNX1-210ENST00000560260 MRS2Q9HD23 443 aa29.08■■■□□ 2.25
SNX1-210ENST00000560260 DDX54Q8TDD1 881 aaKnown RBP29.07■■■□□ 2.24
SNX1-210ENST00000560260 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.07■■■□□ 2.245e-7■■□□□ 12.3
SNX1-210ENST00000560260 PCDH11XQ9BZA7 1347 aa29.07■■■□□ 2.24
SNX1-210ENST00000560260 PCDH11YQ9BZA8 1340 aa29.07■■■□□ 2.24
SNX1-210ENST00000560260 SPG7Q9UQ90 795 aa29.05■■■□□ 2.24
SNX1-210ENST00000560260 FCHSD2O94868 740 aa29.04■■■□□ 2.24
SNX1-210ENST00000560260 TOGARAM1Q9Y4F4 1720 aa29.04■■■□□ 2.24
SNX1-210ENST00000560260 SBF2Q86WG5 1849 aa29.04■■■□□ 2.24
SNX1-210ENST00000560260 BCL9O00512 1426 aa29.03■■■□□ 2.24
SNX1-210ENST00000560260 PLEKHO1Q53GL0 409 aaPredicted RBP29.03■■■□□ 2.24
SNX1-210ENST00000560260 PHACTR3Q96KR7 559 aa29.03■■■□□ 2.24
SNX1-210ENST00000560260 DOT1LQ8TEK3 1739 aa29.03■■■□□ 2.24
SNX1-210ENST00000560260 WDR43Q15061 677 aaKnown RBP eCLIP29.02■■■□□ 2.24
SNX1-210ENST00000560260 MIER1Q8N108 512 aa29.02■■■□□ 2.24
SNX1-210ENST00000560260 PLEKHF1Q96S99 279 aa29.02■■■□□ 2.24
SNX1-210ENST00000560260 ADAMTS8Q9UP79 889 aa29.02■■■□□ 2.24
SNX1-210ENST00000560260 PHKG2P15735 406 aa29.01■■■□□ 2.23
SNX1-210ENST00000560260 MTHFSDQ2M296 383 aaKnown RBP29.01■■■□□ 2.23
SNX1-210ENST00000560260 AMOTQ4VCS5 1084 aa29.01■■■□□ 2.23
SNX1-210ENST00000560260 ZNF530Q6P9A1 599 aaPredicted RBP29.01■■■□□ 2.23
SNX1-210ENST00000560260 PNISRQ8TF01 805 aaKnown RBP29■■■□□ 2.23
SNX1-210ENST00000560260 NHSQ6T4R5 1651 aa28.98■■■□□ 2.23
SNX1-210ENST00000560260 FAM196AQ6ZSG2 479 aa28.98■■■□□ 2.23
SNX1-210ENST00000560260 TNS1Q9HBL0 1735 aaKnown RBP28.98■■■□□ 2.23
SNX1-210ENST00000560260 IFNL2Q8IZJ0 200 aa28.96■■■□□ 2.23
SNX1-210ENST00000560260 KDM6AO15550 1401 aaPredicted RBP28.96■■■□□ 2.23
SNX1-210ENST00000560260 NKX1-1Q15270 411 aaPredicted RBP28.95■■■□□ 2.23
SNX1-210ENST00000560260 CCDC146Q8IYE0 955 aa28.95■■■□□ 2.23
SNX1-210ENST00000560260 PTF1AQ7RTS3 328 aa28.94■■■□□ 2.22
SNX1-210ENST00000560260 ADAMTS7Q9UKP4 1686 aa28.94■■■□□ 2.22
SNX1-210ENST00000560260 CCER2I3L3R5 266 aa28.94■■■□□ 2.22
SNX1-210ENST00000560260 ACSBG1Q96GR2 724 aa28.94■■■□□ 2.22
SNX1-210ENST00000560260 VIRMAQ69YN4 1812 aaKnown RBP28.92■■■□□ 2.22
SNX1-210ENST00000560260 KCNQ2O43526 872 aa28.92■■■□□ 2.22
SNX1-210ENST00000560260 AKAP4Q5JQC9 854 aa28.92■■■□□ 2.22
SNX1-210ENST00000560260 GAS2L2Q8NHY3 880 aa28.92■■■□□ 2.22
SNX1-210ENST00000560260 SCN11AQ9UI33 1791 aa28.91■■■□□ 2.22
SNX1-210ENST00000560260 TRIM37O94972 964 aa28.91■■■□□ 2.22
SNX1-210ENST00000560260 C1orf141Q5JVX7 400 aa28.91■■■□□ 2.22
SNX1-210ENST00000560260 UPF1Q92900 1129 aaKnown RBP eCLIP28.91■■■□□ 2.22
SNX1-210ENST00000560260 DLG5Q8TDM6 1919 aa28.9■■■□□ 2.22
SNX1-210ENST00000560260 MAP3K5Q99683 1374 aa28.9■■■□□ 2.22
SNX1-210ENST00000560260 ITGB4P16144 1822 aa28.89■■■□□ 2.22
SNX1-210ENST00000560260 MAPK8IP3Q9UPT6 1336 aa28.89■■■□□ 2.22
SNX1-210ENST00000560260 MPRIPQ6WCQ1 1025 aa28.88■■■□□ 2.21
SNX1-210ENST00000560260 PNNQ9H307 717 aaKnown RBP28.88■■■□□ 2.21
SNX1-210ENST00000560260 BTAF1O14981 1849 aa28.87■■■□□ 2.21
SNX1-210ENST00000560260 RUNDC1Q96C34 613 aa28.87■■■□□ 2.21
SNX1-210ENST00000560260 HSP90AB1P08238 724 aaKnown RBP28.86■■■□□ 2.21
SNX1-210ENST00000560260 PRIM1P49642 420 aaKnown RBP28.86■■■□□ 2.21
SNX1-210ENST00000560260 DCAF5Q96JK2 942 aa28.86■■■□□ 2.21
SNX1-210ENST00000560260 MRC1P22897 1456 aa28.85■■■□□ 2.21
SNX1-210ENST00000560260 NFE2L2Q16236 605 aa28.85■■■□□ 2.21
SNX1-210ENST00000560260 FAM9BQ8IZU0 186 aa28.85■■■□□ 2.21
SNX1-210ENST00000560260 LGR6Q9HBX8 967 aa28.85■■■□□ 2.21
SNX1-210ENST00000560260 BCL11BQ9C0K0 894 aaPredicted RBP28.84■■■□□ 2.21
SNX1-210ENST00000560260 KAT6BQ8WYB5 2073 aa28.83■■■□□ 2.21
SNX1-210ENST00000560260 GNAT3A8MTJ3 354 aa28.83■■■□□ 2.21
SNX1-210ENST00000560260 RNMTO43148 476 aaKnown RBP28.83■■■□□ 2.21
SNX1-210ENST00000560260 NEFMP07197 916 aa28.83■■■□□ 2.21
SNX1-210ENST00000560260 SYTL4Q96C24 671 aaPredicted RBP28.82■■■□□ 2.2
SNX1-210ENST00000560260 TMPOP42166 694 aaKnown RBP28.81■■■□□ 2.2
SNX1-210ENST00000560260 IL17REQ8NFR9 667 aa28.81■■■□□ 2.2
SNX1-210ENST00000560260 RRP7AQ9Y3A4 280 aaKnown RBP28.81■■■□□ 2.2
SNX1-210ENST00000560260 CEMIPQ8WUJ3 1361 aa28.79■■■□□ 2.2
SNX1-210ENST00000560260 SOCS7O14512 581 aa28.79■■■□□ 2.2
SNX1-210ENST00000560260 SIPA1L3O60292 1781 aaPredicted RBP28.79■■■□□ 2.2
SNX1-210ENST00000560260 ERVV-2B6SEH9 535 aa28.78■■■□□ 2.2
SNX1-210ENST00000560260 APAF1O14727 1248 aa28.78■■■□□ 2.2
SNX1-210ENST00000560260 DCTN1Q14203 1278 aa28.78■■■□□ 2.2
SNX1-210ENST00000560260 MCM10Q7L590 875 aa28.77■■■□□ 2.2
SNX1-210ENST00000560260 PIGBQ92521 554 aa28.77■■■□□ 2.2
SNX1-210ENST00000560260 SENP3-EIF4A1A0A087X0R7 540 aa28.76■■■□□ 2.19
SNX1-210ENST00000560260 APBA3O96018 575 aa28.75■■■□□ 2.19
SNX1-210ENST00000560260 RIPK4P57078 832 aa28.75■■■□□ 2.19
SNX1-210ENST00000560260 DEFB132Q7Z7B7 95 aa28.75■■■□□ 2.19
SNX1-210ENST00000560260 CCDC125Q86Z20 511 aa28.75■■■□□ 2.19
SNX1-210ENST00000560260 RGPD3A6NKT7 1758 aaPredicted RBP28.75■■■□□ 2.19
SNX1-210ENST00000560260 RGPD4Q7Z3J3 1758 aa28.75■■■□□ 2.19
SNX1-210ENST00000560260 PAPPAQ13219 1627 aa28.74■■■□□ 2.19
SNX1-210ENST00000560260 CABP4P57796 275 aa28.74■■■□□ 2.19
SNX1-210ENST00000560260 NEUROD2Q15784 382 aa28.74■■■□□ 2.19
SNX1-210ENST00000560260 SLC52A2Q9HAB3 445 aa28.74■■■□□ 2.19
SNX1-210ENST00000560260 TMOD3Q9NYL9 352 aa28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms