RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 CHRNA4P43681 627 aa5.22□□□□□ -1.57
LIMA1-209ENST00000552008 MAP2K3P46734 347 aa5.22□□□□□ -1.57
LIMA1-209ENST00000552008 CABLES1Q8TDN4 633 aa5.22□□□□□ -1.57
LIMA1-209ENST00000552008 TBC1D2Q9BYX2 928 aa5.22□□□□□ -1.57
LIMA1-209ENST00000552008 GOLGA2P5Q9HBQ8 144 aa5.22□□□□□ -1.57
LIMA1-209ENST00000552008 DIXDC1Q155Q3 683 aa5.21□□□□□ -1.58
LIMA1-209ENST00000552008 FOXD4L6Q3SYB3 417 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-209ENST00000552008 FOXD4L3Q6VB84 417 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-209ENST00000552008 C1orf229Q6ZS94 237 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-209ENST00000552008 BEGAINQ9BUH8 593 aa5.21□□□□□ -1.58
LIMA1-209ENST00000552008 ZFP64Q9NPA5 681 aa5.21□□□□□ -1.58
LIMA1-209ENST00000552008 TMPRSS4Q9NRS4 437 aa5.21□□□□□ -1.58
LIMA1-209ENST00000552008 PIK3R2O00459 728 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 RNF144AP50876 292 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-209ENST00000552008 LINC00114Q6XXX2 140 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 VSIG10Q8N0Z9 540 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 KDF1Q8NAX2 398 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-209ENST00000552008 ZNF784Q8NCA9 323 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-209ENST00000552008 EDARADDQ8WWZ3 215 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 GAS2L1Q99501 681 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-209ENST00000552008 ARHGAP9Q9BRR9 750 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 DYRK1BQ9Y463 629 aa5.2□□□□□ -1.58
LIMA1-209ENST00000552008 AMPD1P23109 780 aa5.19□□□□□ -1.58
LIMA1-209ENST00000552008 TTLL12Q14166 644 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-209ENST00000552008 CSPP1Q1MSJ5 1256 aa5.19□□□□□ -1.58
LIMA1-209ENST00000552008 ARTNQ5T4W7 220 aa5.19□□□□□ -1.58
LIMA1-209ENST00000552008 NBPF11Q86T75 865 aa5.19□□□□□ -1.58
LIMA1-209ENST00000552008 GDF2Q9UK05 429 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-209ENST00000552008 GNB5O14775 395 aa5.18□□□□□ -1.58
LIMA1-209ENST00000552008 ADD1P35611 737 aaKnown RBP5.18□□□□□ -1.58
LIMA1-209ENST00000552008 KLRG1Q96E93 195 aa5.18□□□□□ -1.58
LIMA1-209ENST00000552008 LILRA1O75019 489 aa5.17□□□□□ -1.58
LIMA1-209ENST00000552008 HOXB4P17483 251 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-209ENST00000552008 PDXDC2PQ6P474 469 aa5.17□□□□□ -1.58
LIMA1-209ENST00000552008 GIGYF2Q6Y7W6 1299 aaKnown RBP5.17□□□□□ -1.58
LIMA1-209ENST00000552008 RIC3Q7Z5B4 369 aa5.17□□□□□ -1.58
LIMA1-209ENST00000552008 ZBTB33Q86T24 672 aa5.17□□□□□ -1.58
LIMA1-209ENST00000552008 NUCKS1Q9H1E3 243 aaKnown RBP5.17□□□□□ -1.58
LIMA1-209ENST00000552008 NOP53Q9NZM5 478 aaKnown RBP5.17□□□□□ -1.58
LIMA1-209ENST00000552008 KDM2AQ9Y2K7 1162 aa5.17□□□□□ -1.58
LIMA1-209ENST00000552008 NUTM2BA6NNL0 878 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-209ENST00000552008 NUTM2EB1AL46 878 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-209ENST00000552008 GATA4P43694 442 aa5.16□□□□□ -1.58
LIMA1-209ENST00000552008 RAB15P59190 212 aa5.16□□□□□ -1.58
LIMA1-209ENST00000552008 NUTM2DQ5VT03 806 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-209ENST00000552008 NUTM2AQ8IVF1 878 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-209ENST00000552008 GOLGA6L1Q8N7Z2 621 aa5.16□□□□□ -1.58
LIMA1-209ENST00000552008 HELBQ8NG08 1087 aaPredicted RBP5.16□□□□□ -1.58
LIMA1-209ENST00000552008 RSPO4Q2I0M5 234 aaPredicted RBP5.15□□□□□ -1.59
LIMA1-209ENST00000552008 NBPF20Q3BBV1 942 aa5.15□□□□□ -1.59
LIMA1-209ENST00000552008 CFHR5Q9BXR6 569 aa5.15□□□□□ -1.59
LIMA1-209ENST00000552008 KRTAP4-7Q9BYR0 210 aa5.15□□□□□ -1.59
LIMA1-209ENST00000552008 TULP1O00294 542 aaPredicted RBP5.14□□□□□ -1.59
LIMA1-209ENST00000552008 GPC1P35052 558 aa5.14□□□□□ -1.59
LIMA1-209ENST00000552008 POU4F2Q12837 409 aa5.14□□□□□ -1.59
LIMA1-209ENST00000552008 ERVH48-1M5A8F1 160 aa5.13□□□□□ -1.59
LIMA1-209ENST00000552008 QPCTQ16769 361 aa5.13□□□□□ -1.59
LIMA1-209ENST00000552008 PHF24Q9UPV7 400 aa5.13□□□□□ -1.59
LIMA1-209ENST00000552008 MEN1O00255 615 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 F11P03951 625 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 DGKGP49619 791 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 NKAPLQ5M9Q1 402 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 NBPF10Q6P3W6 841 aaKnown RBP5.12□□□□□ -1.59
LIMA1-209ENST00000552008 SLCO4C1Q6ZQN7 724 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 NBPF15Q8N660 670 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 BCANQ96GW7 911 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 CYLDQ9NQC7 956 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 FKBPLQ9UIM3 349 aa5.12□□□□□ -1.59
LIMA1-209ENST00000552008 LILRB3O75022 631 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 AMHR2Q16671 573 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 SLC27A3Q5K4L6 730 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 ADAM32Q8TC27 787 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 BTBD6Q96KE9 485 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 TIMMDC1Q9NPL8 285 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 LIMD1Q9UGP4 676 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 GGA1Q9UJY5 639 aa5.11□□□□□ -1.59
LIMA1-209ENST00000552008 ATP5J2-PTCD1G3V325 749 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 DYRK3O43781 588 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 THBS1P07996 1170 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 BMP4P12644 408 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 PTK2Q05397 1052 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 LCE1DQ5T752 114 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 OCSTAMPQ9BR26 566 aa5.1□□□□□ -1.59
LIMA1-209ENST00000552008 ZC3H4Q9UPT8 1303 aaKnown RBP5.09□□□□□ -1.59
LIMA1-209ENST00000552008 A0A1W2PRU2 124 aa5.09□□□□□ -1.59
LIMA1-209ENST00000552008 COBLO75128 1261 aa5.09□□□□□ -1.59
LIMA1-209ENST00000552008 EPXP11678 715 aa5.09□□□□□ -1.59
LIMA1-209ENST00000552008 RTL5Q5HYW3 569 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-209ENST00000552008 WDR44Q5JSH3 913 aa5.09□□□□□ -1.59
LIMA1-209ENST00000552008 TPSG1Q9NRR2 321 aa5.09□□□□□ -1.59
LIMA1-209ENST00000552008 SPATA31C2B4DYI2 1134 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 LRP8Q14114 963 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 TUSC1Q2TAM9 212 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 PRSS36Q5K4E3 855 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 TRIM52Q96A61 297 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 NLRP3Q96P20 1036 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 GRIP2Q9C0E4 1043 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 GPAMQ9HCL2 828 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 GPSM3Q9Y4H4 160 aa5.08□□□□□ -1.6
LIMA1-209ENST00000552008 ESPNB1AK53 854 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms