RNA–Protein interactions for RNA: ENST00000551630.1

PTCH1-224, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 539 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-224ENST00000551630 FAM182BQ5T319 152 aa20.49■□□□□ 0.87
PTCH1-224ENST00000551630 KRT27Q7Z3Y8 459 aa20.49■□□□□ 0.87
PTCH1-224ENST00000551630 EXOC5O00471 708 aa20.48■□□□□ 0.87
PTCH1-224ENST00000551630 U2AF1L5P0DN76 240 aaPredicted RBP20.48■□□□□ 0.87
PTCH1-224ENST00000551630 U2AF1Q01081 240 aaKnown RBP eCLIP20.48■□□□□ 0.87
PTCH1-224ENST00000551630 PDE3BQ13370 1112 aa20.48■□□□□ 0.87
PTCH1-224ENST00000551630 SHANK3Q9BYB0 1731 aa20.47■□□□□ 0.87
PTCH1-224ENST00000551630 PKD1L3Q7Z443 1732 aa20.47■□□□□ 0.87
PTCH1-224ENST00000551630 ZCRB1Q8TBF4 217 aaKnown RBP20.46■□□□□ 0.87
PTCH1-224ENST00000551630 MARCH10Q8NA82 808 aaPredicted RBP20.45■□□□□ 0.86
PTCH1-224ENST00000551630 DDX54Q8TDD1 881 aaKnown RBP20.44■□□□□ 0.86
PTCH1-224ENST00000551630 RSPH6AQ9H0K4 717 aa20.44■□□□□ 0.86
PTCH1-224ENST00000551630 PRKAR2BP31323 418 aa20.42■□□□□ 0.86
PTCH1-224ENST00000551630 MRS2Q9HD23 443 aa20.42■□□□□ 0.86
PTCH1-224ENST00000551630 SPG7Q9UQ90 795 aa20.41■□□□□ 0.86
PTCH1-224ENST00000551630 PCDH11XQ9BZA7 1347 aa20.41■□□□□ 0.86
PTCH1-224ENST00000551630 PCDH11YQ9BZA8 1340 aa20.41■□□□□ 0.86
PTCH1-224ENST00000551630 WDR43Q15061 677 aaKnown RBP eCLIP20.4■□□□□ 0.86
PTCH1-224ENST00000551630 PLEKHO1Q53GL0 409 aaPredicted RBP20.4■□□□□ 0.86
PTCH1-224ENST00000551630 PLEKHG2Q9H7P9 1386 aa20.4■□□□□ 0.86
PTCH1-224ENST00000551630 CYP27B1O15528 508 aa20.39■□□□□ 0.85
PTCH1-224ENST00000551630 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.39■□□□□ 0.85
PTCH1-224ENST00000551630 FCHSD2O94868 740 aa20.38■□□□□ 0.85
PTCH1-224ENST00000551630 AMOTQ4VCS5 1084 aa20.38■□□□□ 0.85
PTCH1-224ENST00000551630 ZNF530Q6P9A1 599 aaPredicted RBP20.38■□□□□ 0.85
PTCH1-224ENST00000551630 PHKG2P15735 406 aa20.36■□□□□ 0.85
PTCH1-224ENST00000551630 MTHFSDQ2M296 383 aaKnown RBP20.36■□□□□ 0.85
PTCH1-224ENST00000551630 FAM196AQ6ZSG2 479 aa20.36■□□□□ 0.85
PTCH1-224ENST00000551630 PHACTR3Q96KR7 559 aa20.36■□□□□ 0.85
PTCH1-224ENST00000551630 MIER1Q8N108 512 aa20.35■□□□□ 0.85
PTCH1-224ENST00000551630 ADAMTS8Q9UP79 889 aa20.35■□□□□ 0.85
PTCH1-224ENST00000551630 DOT1LQ8TEK3 1739 aa20.34■□□□□ 0.85
PTCH1-224ENST00000551630 IFNL2Q8IZJ0 200 aa20.34■□□□□ 0.85
PTCH1-224ENST00000551630 ACSBG1Q96GR2 724 aa20.34■□□□□ 0.85
PTCH1-224ENST00000551630 PLEKHF1Q96S99 279 aa20.34■□□□□ 0.85
PTCH1-224ENST00000551630 BCL9O00512 1426 aa20.34■□□□□ 0.85
PTCH1-224ENST00000551630 CCDC146Q8IYE0 955 aa20.33■□□□□ 0.85
PTCH1-224ENST00000551630 TOGARAM1Q9Y4F4 1720 aa20.33■□□□□ 0.84
PTCH1-224ENST00000551630 TRIM37O94972 964 aa20.32■□□□□ 0.84
PTCH1-224ENST00000551630 C1orf141Q5JVX7 400 aa20.32■□□□□ 0.84
PTCH1-224ENST00000551630 PNISRQ8TF01 805 aaKnown RBP20.32■□□□□ 0.84
PTCH1-224ENST00000551630 PTF1AQ7RTS3 328 aa20.31■□□□□ 0.84
PTCH1-224ENST00000551630 GAS2L2Q8NHY3 880 aa20.31■□□□□ 0.84
PTCH1-224ENST00000551630 SBF2Q86WG5 1849 aa20.31■□□□□ 0.84
PTCH1-224ENST00000551630 MAPK8IP3Q9UPT6 1336 aa20.3■□□□□ 0.84
PTCH1-224ENST00000551630 KDM6AO15550 1401 aaPredicted RBP20.3■□□□□ 0.84
PTCH1-224ENST00000551630 NHSQ6T4R5 1651 aa20.3■□□□□ 0.84
PTCH1-224ENST00000551630 AKAP4Q5JQC9 854 aa20.3■□□□□ 0.84
PTCH1-224ENST00000551630 CCER2I3L3R5 266 aa20.29■□□□□ 0.84
PTCH1-224ENST00000551630 KCNQ2O43526 872 aa20.29■□□□□ 0.84
PTCH1-224ENST00000551630 NEFMP07197 916 aa20.29■□□□□ 0.84
PTCH1-224ENST00000551630 NKX1-1Q15270 411 aaPredicted RBP20.29■□□□□ 0.84
PTCH1-224ENST00000551630 UPF1Q92900 1129 aaKnown RBP eCLIP20.29■□□□□ 0.84
PTCH1-224ENST00000551630 PNNQ9H307 717 aaKnown RBP20.29■□□□□ 0.84
PTCH1-224ENST00000551630 TNS1Q9HBL0 1735 aaKnown RBP20.28■□□□□ 0.84
PTCH1-224ENST00000551630 MPRIPQ6WCQ1 1025 aa20.28■□□□□ 0.84
PTCH1-224ENST00000551630 SYTL4Q96C24 671 aaPredicted RBP20.28■□□□□ 0.84
PTCH1-224ENST00000551630 MAP3K5Q99683 1374 aa20.28■□□□□ 0.84
PTCH1-224ENST00000551630 EP400Q96L91 3159 aa20.27■□□□□ 0.84
PTCH1-224ENST00000551630 HSP90AB1P08238 724 aaKnown RBP20.27■□□□□ 0.84
PTCH1-224ENST00000551630 PRIM1P49642 420 aaKnown RBP20.27■□□□□ 0.84
PTCH1-224ENST00000551630 FAM9BQ8IZU0 186 aa20.27■□□□□ 0.84
PTCH1-224ENST00000551630 RUNDC1Q96C34 613 aa20.27■□□□□ 0.84
PTCH1-224ENST00000551630 NFE2L2Q16236 605 aa20.25■□□□□ 0.83
PTCH1-224ENST00000551630 DCAF5Q96JK2 942 aa20.25■□□□□ 0.83
PTCH1-224ENST00000551630 GNAT3A8MTJ3 354 aa20.24■□□□□ 0.83
PTCH1-224ENST00000551630 RNMTO43148 476 aaKnown RBP20.24■□□□□ 0.83
PTCH1-224ENST00000551630 BCL11BQ9C0K0 894 aaPredicted RBP20.24■□□□□ 0.83
PTCH1-224ENST00000551630 LGR6Q9HBX8 967 aa20.24■□□□□ 0.83
PTCH1-224ENST00000551630 RRP7AQ9Y3A4 280 aaKnown RBP20.24■□□□□ 0.83
PTCH1-224ENST00000551630 SCN11AQ9UI33 1791 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 KAT6BQ8WYB5 2073 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 ADAMTS7Q9UKP4 1686 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 SOCS7O14512 581 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 SF3B2Q13435 895 aaKnown RBP20.23■□□□□ 0.83
PTCH1-224ENST00000551630 BTAF1O14981 1849 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 ITGB4P16144 1822 aa20.23■□□□□ 0.83
PTCH1-224ENST00000551630 SENP3-EIF4A1A0A087X0R7 540 aa20.22■□□□□ 0.83
PTCH1-224ENST00000551630 DLG5Q8TDM6 1919 aa20.21■□□□□ 0.83
PTCH1-224ENST00000551630 VIRMAQ69YN4 1812 aaKnown RBP20.21■□□□□ 0.83
PTCH1-224ENST00000551630 APBA3O96018 575 aa20.21■□□□□ 0.83
PTCH1-224ENST00000551630 TMPOP42166 694 aaKnown RBP20.21■□□□□ 0.83
PTCH1-224ENST00000551630 DCTN1Q14203 1278 aa20.21■□□□□ 0.83
PTCH1-224ENST00000551630 NEUROD2Q15784 382 aa20.21■□□□□ 0.83
PTCH1-224ENST00000551630 MRC1P22897 1456 aa20.21■□□□□ 0.83
PTCH1-224ENST00000551630 MCM10Q7L590 875 aa20.2■□□□□ 0.82
PTCH1-224ENST00000551630 DEFB132Q7Z7B7 95 aa20.2■□□□□ 0.82
PTCH1-224ENST00000551630 IL17REQ8NFR9 667 aa20.2■□□□□ 0.82
PTCH1-224ENST00000551630 TMOD3Q9NYL9 352 aa20.2■□□□□ 0.82
PTCH1-224ENST00000551630 ERVV-2B6SEH9 535 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 APAF1O14727 1248 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 RIPK4P57078 832 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 CABP4P57796 275 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 CCDC125Q86Z20 511 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 PIGBQ92521 554 aa20.19■□□□□ 0.82
PTCH1-224ENST00000551630 RTF1Q92541 710 aaKnown RBP20.19■□□□□ 0.82
PTCH1-224ENST00000551630 BAG6P46379 1132 aa20.17■□□□□ 0.82
PTCH1-224ENST00000551630 EN1Q05925 392 aaPredicted RBP20.17■□□□□ 0.82
PTCH1-224ENST00000551630 THUMPD2Q9BTF0 503 aaKnown RBP20.17■□□□□ 0.82
PTCH1-224ENST00000551630 SLC52A2Q9HAB3 445 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms