RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 BCRP11274 1271 aa7.32□□□□□ -1.24
LIMA1-206ENST00000550611 NBPF20Q3BBV1 942 aa7.32□□□□□ -1.24
LIMA1-206ENST00000550611 TRIM22Q8IYM9 498 aa7.32□□□□□ -1.24
LIMA1-206ENST00000550611 KDF1Q8NAX2 398 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-206ENST00000550611 ZNF837Q96EG3 531 aaPredicted RBP7.32□□□□□ -1.24
LIMA1-206ENST00000550611 CLK2P49760 499 aaKnown RBP7.31□□□□□ -1.24
LIMA1-206ENST00000550611 PTK2Q05397 1052 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 CTDSPL2Q05D32 466 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 FOXR1Q6PIV2 292 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 ZNF784Q8NCA9 323 aaPredicted RBP7.31□□□□□ -1.24
LIMA1-206ENST00000550611 GALNT6Q8NCL4 622 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 AK7Q96M32 723 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 OCSTAMPQ9BR26 566 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 KRTAP4-8Q9BYQ9 185 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 IGF1RP08069 1367 aa7.31□□□□□ -1.24
LIMA1-206ENST00000550611 RNF144AP50876 292 aaPredicted RBP7.3□□□□□ -1.24
LIMA1-206ENST00000550611 NEDD1Q8NHV4 660 aa7.3□□□□□ -1.24
LIMA1-206ENST00000550611 K7ELQ4 463 aaPredicted RBP7.29□□□□□ -1.24
LIMA1-206ENST00000550611 ADD1P35611 737 aaKnown RBP7.29□□□□□ -1.24
LIMA1-206ENST00000550611 ADAM32Q8TC27 787 aa7.29□□□□□ -1.24
LIMA1-206ENST00000550611 TMPRSS4Q9NRS4 437 aa7.29□□□□□ -1.24
LIMA1-206ENST00000550611 ACDQ96AP0 544 aa7.28□□□□□ -1.24
LIMA1-206ENST00000550611 RSPH6AQ9H0K4 717 aa7.28□□□□□ -1.24
LIMA1-206ENST00000550611 DBN1Q16643 649 aa7.27□□□□□ -1.25
LIMA1-206ENST00000550611 LRRN4Q8WUT4 740 aa7.27□□□□□ -1.25
LIMA1-206ENST00000550611 TRIM52Q96A61 297 aa7.27□□□□□ -1.25
LIMA1-206ENST00000550611 ESPNB1AK53 854 aa7.26□□□□□ -1.25
LIMA1-206ENST00000550611 H7C1W4 665 aa7.26□□□□□ -1.25
LIMA1-206ENST00000550611 ERVH48-1M5A8F1 160 aa7.26□□□□□ -1.25
LIMA1-206ENST00000550611 GPC1P35052 558 aa7.26□□□□□ -1.25
LIMA1-206ENST00000550611 PRICKLE2Q7Z3G6 844 aa7.26□□□□□ -1.25
LIMA1-206ENST00000550611 ALYREFQ86V81 257 aaKnown RBP7.26□□□□□ -1.25
LIMA1-206ENST00000550611 GPR25O00155 361 aa7.25□□□□□ -1.25
LIMA1-206ENST00000550611 NR6A1Q15406 480 aa7.25□□□□□ -1.25
LIMA1-206ENST00000550611 PPP2R2DQ66LE6 453 aa7.25□□□□□ -1.25
LIMA1-206ENST00000550611 NSFL1CQ9UNZ2 370 aaKnown RBP7.25□□□□□ -1.25
LIMA1-206ENST00000550611 DYRK1BQ9Y463 629 aa7.25□□□□□ -1.25
LIMA1-206ENST00000550611 OIP5O43482 229 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 RHOQP17081 205 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 PDE4DQ08499 809 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 SEPT12Q8IYM1 358 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 Q8N3U1 123 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 GTPBP3Q969Y2 492 aaKnown RBP7.24□□□□□ -1.25
LIMA1-206ENST00000550611 TRERF1Q96PN7 1200 aa7.24□□□□□ -1.25
LIMA1-206ENST00000550611 BAG6P46379 1132 aa7.23□□□□□ -1.25
LIMA1-206ENST00000550611 RAB15P59190 212 aa7.23□□□□□ -1.25
LIMA1-206ENST00000550611 RIPOR1Q6ZS17 1223 aa7.23□□□□□ -1.25
LIMA1-206ENST00000550611 POLR3EQ9NVU0 708 aa7.23□□□□□ -1.25
LIMA1-206ENST00000550611 KRBA1A5PL33 1030 aa7.22□□□□□ -1.25
LIMA1-206ENST00000550611 MX2P20592 715 aa7.22□□□□□ -1.25
LIMA1-206ENST00000550611 DZIP3Q86Y13 1208 aaKnown RBP7.22□□□□□ -1.25
LIMA1-206ENST00000550611 WDR44Q5JSH3 913 aa7.21□□□□□ -1.26
LIMA1-206ENST00000550611 CYB5RLQ6IPT4 315 aa7.21□□□□□ -1.26
LIMA1-206ENST00000550611 PNMA1Q8ND90 353 aa7.21□□□□□ -1.26
LIMA1-206ENST00000550611 THOC2Q8NI27 1593 aaKnown RBP7.2□□□□□ -1.26
LIMA1-206ENST00000550611 MAP2K3P46734 347 aa7.2□□□□□ -1.26
LIMA1-206ENST00000550611 OXCT2Q9BYC2 517 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-206ENST00000550611 CYLDQ9NQC7 956 aa7.2□□□□□ -1.26
LIMA1-206ENST00000550611 MKL2Q9ULH7 1088 aa7.2□□□□□ -1.26
LIMA1-206ENST00000550611 NCAPD3P42695 1498 aa7.19□□□□□ -1.26
LIMA1-206ENST00000550611 ATP5J2-PTCD1G3V325 749 aa7.19□□□□□ -1.26
LIMA1-206ENST00000550611 SNRPNP63162 240 aaKnown RBP7.19□□□□□ -1.26
LIMA1-206ENST00000550611 CCDC125Q86Z20 511 aa7.19□□□□□ -1.26
LIMA1-206ENST00000550611 PSMG3-AS1Q96PY0 264 aa7.19□□□□□ -1.26
LIMA1-206ENST00000550611 SMARCA2P51531 1590 aa7.18□□□□□ -1.26
LIMA1-206ENST00000550611 KRTAP9-2Q9BYQ4 174 aa7.18□□□□□ -1.26
LIMA1-206ENST00000550611 A0A1W2PRU2 124 aa7.17□□□□□ -1.26
LIMA1-206ENST00000550611 SPATA31C2B4DYI2 1134 aa7.17□□□□□ -1.26
LIMA1-206ENST00000550611 MEN1O00255 615 aa7.17□□□□□ -1.26
LIMA1-206ENST00000550611 POU4F2Q12837 409 aa7.17□□□□□ -1.26
LIMA1-206ENST00000550611 GAS2L1Q99501 681 aaPredicted RBP7.17□□□□□ -1.26
LIMA1-206ENST00000550611 CFHR5Q9BXR6 569 aa7.17□□□□□ -1.26
LIMA1-206ENST00000550611 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.16□□□□□ -1.26
LIMA1-206ENST00000550611 FURINP09958 794 aa7.16□□□□□ -1.26
LIMA1-206ENST00000550611 COL8A1P27658 744 aa7.16□□□□□ -1.26
LIMA1-206ENST00000550611 SKIV2LQ15477 1246 aaKnown RBP7.16□□□□□ -1.26
LIMA1-206ENST00000550611 NBPF10Q6P3W6 841 aaKnown RBP7.16□□□□□ -1.26
LIMA1-206ENST00000550611 NBPF15Q8N660 670 aa7.16□□□□□ -1.26
LIMA1-206ENST00000550611 GRIP2Q9C0E4 1043 aa7.16□□□□□ -1.26
LIMA1-206ENST00000550611 NUCKS1Q9H1E3 243 aaKnown RBP7.16□□□□□ -1.26
LIMA1-206ENST00000550611 SHISA8B8ZZ34 492 aa7.15□□□□□ -1.26
LIMA1-206ENST00000550611 F11P03951 625 aa7.15□□□□□ -1.26
LIMA1-206ENST00000550611 CLN3Q13286 438 aa7.15□□□□□ -1.26
LIMA1-206ENST00000550611 SLC27A3Q5K4L6 730 aa7.15□□□□□ -1.26
LIMA1-206ENST00000550611 FBXO31Q5XUX0 539 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-206ENST00000550611 EPS8L1Q8TE68 723 aa7.15□□□□□ -1.26
LIMA1-206ENST00000550611 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.15□□□□□ -1.26
LIMA1-206ENST00000550611 GDF2Q9UK05 429 aaPredicted RBP7.15□□□□□ -1.26
LIMA1-206ENST00000550611 RIMBP3CA6NJZ7 1639 aa7.15□□□□□ -1.27
LIMA1-206ENST00000550611 RIMBP3BA6NNM3 1639 aa7.15□□□□□ -1.27
LIMA1-206ENST00000550611 RIMBP3Q9UFD9 1639 aa7.15□□□□□ -1.27
LIMA1-206ENST00000550611 ERVK-9P63128 1117 aa7.14□□□□□ -1.27
LIMA1-206ENST00000550611 NLRP3Q96P20 1036 aa7.14□□□□□ -1.27
LIMA1-206ENST00000550611 SH3D19Q5HYK7 790 aa7.13□□□□□ -1.27
LIMA1-206ENST00000550611 KLRG1Q96E93 195 aa7.13□□□□□ -1.27
LIMA1-206ENST00000550611 TIMMDC1Q9NPL8 285 aa7.13□□□□□ -1.27
LIMA1-206ENST00000550611 BAZ1AQ9NRL2 1556 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-206ENST00000550611 ATAD2BQ9ULI0 1458 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 KRTAP9-6A0A140TA67 174 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 PIK3R2O00459 728 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms