RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 MTHFSP49914 203 aa12.72□□□□□ -0.37
YBX3-215ENST00000544504 TXNRD1Q16881 649 aa12.72□□□□□ -0.37
YBX3-215ENST00000544504 SMG6Q86US8 1419 aaKnown RBP12.71□□□□□ -0.37
YBX3-215ENST00000544504 CHD4Q14839 1912 aa12.71□□□□□ -0.37
YBX3-215ENST00000544504 GPR162Q16538 588 aa12.71□□□□□ -0.37
YBX3-215ENST00000544504 INSRP06213 1382 aa12.7□□□□□ -0.38
YBX3-215ENST00000544504 WDR43Q15061 677 aaKnown RBP eCLIP12.7□□□□□ -0.38
YBX3-215ENST00000544504 CDCA7Q9BWT1 371 aaPredicted RBP12.7□□□□□ -0.38
YBX3-215ENST00000544504 NUDCQ9Y266 331 aa12.7□□□□□ -0.38
YBX3-215ENST00000544504 SLIT3O75094 1523 aa12.7□□□□□ -0.38
YBX3-215ENST00000544504 LRRC37A3O60309 1634 aa12.7□□□□□ -0.38
YBX3-215ENST00000544504 MARCH10Q8NA82 808 aaPredicted RBP12.69□□□□□ -0.38
YBX3-215ENST00000544504 POLKQ9UBT6 870 aa12.69□□□□□ -0.38
YBX3-215ENST00000544504 RTL1A6NKG5 1358 aa12.69□□□□□ -0.38
YBX3-215ENST00000544504 MAP2P11137 1827 aaKnown RBP12.68□□□□□ -0.38
YBX3-215ENST00000544504 SBF2Q86WG5 1849 aa12.68□□□□□ -0.38
YBX3-215ENST00000544504 TOM1L2Q6ZVM7 507 aa12.68□□□□□ -0.38
YBX3-215ENST00000544504 PNISRQ8TF01 805 aaKnown RBP12.68□□□□□ -0.38
YBX3-215ENST00000544504 FLT4P35916 1363 aa12.67□□□□□ -0.38
YBX3-215ENST00000544504 PPM1GO15355 546 aaPredicted RBP12.66□□□□□ -0.38
YBX3-215ENST00000544504 DIAPH1O60610 1272 aaKnown RBP12.66□□□□□ -0.38
YBX3-215ENST00000544504 AMPHP49418 695 aa12.66□□□□□ -0.38
YBX3-215ENST00000544504 CCDC184Q52MB2 194 aa12.66□□□□□ -0.38
YBX3-215ENST00000544504 FAM9BQ8IZU0 186 aa12.66□□□□□ -0.38
YBX3-215ENST00000544504 NFAT5O94916 1531 aa12.66□□□□□ -0.38
YBX3-215ENST00000544504 MAP3K19Q56UN5 1328 aa12.65□□□□□ -0.38
YBX3-215ENST00000544504 WDR17Q8IZU2 1322 aa12.65□□□□□ -0.38
YBX3-215ENST00000544504 ZBTB7CA1YPR0 619 aa12.65□□□□□ -0.38
YBX3-215ENST00000544504 RRS1Q15050 365 aaKnown RBP12.65□□□□□ -0.38
YBX3-215ENST00000544504 PNNQ9H307 717 aaKnown RBP12.65□□□□□ -0.38
YBX3-215ENST00000544504 EMILIN1Q9Y6C2 1016 aa12.65□□□□□ -0.38
YBX3-215ENST00000544504 ABCC6O95255 1503 aa12.64□□□□□ -0.39
YBX3-215ENST00000544504 SOX12O15370 315 aa12.64□□□□□ -0.39
YBX3-215ENST00000544504 EXOC5O00471 708 aa12.63□□□□□ -0.39
YBX3-215ENST00000544504 ARHGEF25Q86VW2 580 aa12.63□□□□□ -0.39
YBX3-215ENST00000544504 IP6K1Q92551 441 aa12.63□□□□□ -0.39
YBX3-215ENST00000544504 COL3A1P02461 1466 aaPredicted RBP12.63□□□□□ -0.39
YBX3-215ENST00000544504 POLD1P28340 1107 aa12.62□□□□□ -0.39
YBX3-215ENST00000544504 PELP1Q8IZL8 1130 aaKnown RBP12.62□□□□□ -0.39
YBX3-215ENST00000544504 SHANK3Q9BYB0 1731 aa12.62□□□□□ -0.39
YBX3-215ENST00000544504 LTN1O94822 1766 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 FBLN1P23142 703 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 HOXC9P31274 260 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 KLHL34Q8N239 644 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 SLC16A10Q8TF71 515 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 CARD10Q9BWT7 1032 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 AXIN2Q9Y2T1 843 aa12.61□□□□□ -0.39
YBX3-215ENST00000544504 U2SURPO15042 1029 aaKnown RBP12.6□□□□□ -0.39
YBX3-215ENST00000544504 GRIN3BO60391 1043 aa12.6□□□□□ -0.39
YBX3-215ENST00000544504 NEFMP07197 916 aa12.6□□□□□ -0.39
YBX3-215ENST00000544504 U2AF1L5P0DN76 240 aaPredicted RBP12.6□□□□□ -0.39
YBX3-215ENST00000544504 IL13P35225 146 aa12.6□□□□□ -0.39
YBX3-215ENST00000544504 U2AF1Q01081 240 aaKnown RBP eCLIP12.6□□□□□ -0.393e-16■■□□□ 13.9
YBX3-215ENST00000544504 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
YBX3-215ENST00000544504 ADAMTS8Q9UP79 889 aa12.6□□□□□ -0.39
YBX3-215ENST00000544504 PAPPAQ13219 1627 aa12.59□□□□□ -0.39
YBX3-215ENST00000544504 HSPA6P17066 643 aa12.59□□□□□ -0.39
YBX3-215ENST00000544504 ZNF827Q17R98 1081 aa12.59□□□□□ -0.39
YBX3-215ENST00000544504 WNK3Q9BYP7 1800 aa12.58□□□□□ -0.4
YBX3-215ENST00000544504 FCHSD2O94868 740 aa12.58□□□□□ -0.4
YBX3-215ENST00000544504 CSB-PGBD3P0DP91 1061 aa12.58□□□□□ -0.4
YBX3-215ENST00000544504 EIF4A2Q14240 407 aaKnown RBP12.58□□□□□ -0.4
YBX3-215ENST00000544504 HSP90AB2PQ58FF8 381 aa12.58□□□□□ -0.4
YBX3-215ENST00000544504 TNS2Q63HR2 1409 aa12.58□□□□□ -0.4
YBX3-215ENST00000544504 NHSQ6T4R5 1651 aa12.57□□□□□ -0.4
YBX3-215ENST00000544504 ATP10DQ9P241 1426 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 HNRNPUQ00839 825 aaKnown RBP eCLIP12.56□□□□□ -0.4
YBX3-215ENST00000544504 NLGN2Q8NFZ4 835 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 AKT1S1Q96B36 256 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 RUNDC1Q96C34 613 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 ACSBG1Q96GR2 724 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 YTHDC1Q96MU7 727 aaKnown RBP12.56□□□□□ -0.4
YBX3-215ENST00000544504 GPBP1L1Q9HC44 474 aaPredicted RBP12.56□□□□□ -0.4
YBX3-215ENST00000544504 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 COL18A1P39060 1754 aa12.56□□□□□ -0.4
YBX3-215ENST00000544504 YBX3P16989 372 aaKnown RBP eCLIP12.55□□□□□ -0.43e-11■■■□□ 16.5
YBX3-215ENST00000544504 NCBP3Q53F19 620 aaKnown RBP12.55□□□□□ -0.4
YBX3-215ENST00000544504 LRRC4BQ9NT99 713 aa12.55□□□□□ -0.4
YBX3-215ENST00000544504 FAM208AQ9UK61 1670 aaKnown RBP12.54□□□□□ -0.4
YBX3-215ENST00000544504 SLC27A3Q5K4L6 730 aa12.54□□□□□ -0.4
YBX3-215ENST00000544504 ANKRD24Q8TF21 1146 aa12.54□□□□□ -0.4
YBX3-215ENST00000544504 IGSF1Q8N6C5 1336 aa12.54□□□□□ -0.4
YBX3-215ENST00000544504 TFCP2L1Q9NZI6 479 aa12.53□□□□□ -0.4
YBX3-215ENST00000544504 ERBB3P21860 1342 aa12.53□□□□□ -0.4
YBX3-215ENST00000544504 ZBED9Q6R2W3 1325 aa12.53□□□□□ -0.4
YBX3-215ENST00000544504 PNPLA7Q6ZV29 1317 aa12.53□□□□□ -0.4
YBX3-215ENST00000544504 PLEKHG2Q9H7P9 1386 aa12.53□□□□□ -0.4
YBX3-215ENST00000544504 CENPBP07199 599 aaPredicted RBP12.52□□□□□ -0.41
YBX3-215ENST00000544504 SULT6B1Q6IMI4 303 aa12.52□□□□□ -0.41
YBX3-215ENST00000544504 LTV1Q96GA3 475 aaPredicted RBP12.52□□□□□ -0.41
YBX3-215ENST00000544504 EYA1Q99502 592 aa12.52□□□□□ -0.41
YBX3-215ENST00000544504 RSPH6AQ9H0K4 717 aa12.52□□□□□ -0.41
YBX3-215ENST00000544504 KDRP35968 1356 aa12.52□□□□□ -0.41
YBX3-215ENST00000544504 COL24A1Q17RW2 1714 aa12.51□□□□□ -0.41
YBX3-215ENST00000544504 PRKAR2BP31323 418 aa12.51□□□□□ -0.41
YBX3-215ENST00000544504 HMOX1P09601 288 aa12.5□□□□□ -0.41
YBX3-215ENST00000544504 CCDC146Q8IYE0 955 aa12.5□□□□□ -0.41
YBX3-215ENST00000544504 PLEKHF1Q96S99 279 aa12.5□□□□□ -0.41
YBX3-215ENST00000544504 ADCY9O60503 1353 aa12.5□□□□□ -0.41
YBX3-215ENST00000544504 NCAPD2Q15021 1401 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms