RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 ANKARQ7Z5J8 1434 aa13.77□□□□□ -0.21
TRIM3-211ENST00000532542 ARHGEF10O15013 1369 aa13.77□□□□□ -0.21
TRIM3-211ENST00000532542 GCP02774 474 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 CHD1LQ86WJ1 897 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 ANKRD24Q8TF21 1146 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 PNPLA6Q8IY17 1366 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 PCDHB15Q9Y5E8 787 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 TRIM6-TRIM34B2RNG4 842 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 SKAP1Q86WV1 359 aa13.76□□□□□ -0.21
TRIM3-211ENST00000532542 PHF23Q9BUL5 403 aaPredicted RBP13.76□□□□□ -0.21
TRIM3-211ENST00000532542 HDAC1Q13547 482 aaPredicted RBP13.75□□□□□ -0.21
TRIM3-211ENST00000532542 TSPYL6Q8N831 410 aa13.75□□□□□ -0.21
TRIM3-211ENST00000532542 GOLGA6L22H0YM25 854 aa13.75□□□□□ -0.21
TRIM3-211ENST00000532542 HSP90AB4PQ58FF6 505 aa13.75□□□□□ -0.21
TRIM3-211ENST00000532542 ORAI2Q96SN7 254 aa13.75□□□□□ -0.21
TRIM3-211ENST00000532542 PTCH1Q13635 1447 aa13.75□□□□□ -0.21
TRIM3-211ENST00000532542 TNNQ9UQP3 1299 aa13.74□□□□□ -0.21
TRIM3-211ENST00000532542 TOM1L2Q6ZVM7 507 aa13.74□□□□□ -0.21
TRIM3-211ENST00000532542 ZNF330Q9Y3S2 320 aaPredicted RBP13.74□□□□□ -0.21
TRIM3-211ENST00000532542 SRCIN1Q9C0H9 1055 aa13.74□□□□□ -0.21
TRIM3-211ENST00000532542 CHL1O00533 1208 aa13.73□□□□□ -0.21
TRIM3-211ENST00000532542 HSPA2P54652 639 aa13.73□□□□□ -0.21
TRIM3-211ENST00000532542 KIAA1211Q6ZU35 1233 aa13.73□□□□□ -0.21
TRIM3-211ENST00000532542 DNAJC5Q9H3Z4 198 aa13.73□□□□□ -0.21
TRIM3-211ENST00000532542 SLKQ9H2G2 1235 aaPredicted RBP13.73□□□□□ -0.21
TRIM3-211ENST00000532542 KDM2BQ8NHM5 1336 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 RIC3Q7Z5B4 369 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 C22orf23Q9BZE7 217 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 MAP3K5Q99683 1374 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 MPRIPQ6WCQ1 1025 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 KIF24Q5T7B8 1368 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 MYOM1P52179 1685 aa13.72□□□□□ -0.21
TRIM3-211ENST00000532542 CDC45O75419 566 aa13.71□□□□□ -0.21
TRIM3-211ENST00000532542 KCNJ4P48050 445 aa13.71□□□□□ -0.21
TRIM3-211ENST00000532542 CCDC9Q9Y3X0 531 aaKnown RBP13.71□□□□□ -0.21
TRIM3-211ENST00000532542 AIMP1Q12904 312 aaKnown RBP13.71□□□□□ -0.21
TRIM3-211ENST00000532542 FLIIQ13045 1269 aa13.71□□□□□ -0.21
TRIM3-211ENST00000532542 AKAP4Q5JQC9 854 aa13.71□□□□□ -0.21
TRIM3-211ENST00000532542 CDC42BPGQ6DT37 1551 aa13.71□□□□□ -0.21
TRIM3-211ENST00000532542 REC8O95072 547 aa13.71□□□□□ -0.22
TRIM3-211ENST00000532542 SLC4A3P48751 1232 aa13.71□□□□□ -0.22
TRIM3-211ENST00000532542 CABP4P57796 275 aa13.71□□□□□ -0.22
TRIM3-211ENST00000532542 SPRYD3Q8NCJ5 442 aa13.71□□□□□ -0.22
TRIM3-211ENST00000532542 SOS1Q07889 1333 aaPredicted RBP13.71□□□□□ -0.22
TRIM3-211ENST00000532542 INTS3Q68E01 1043 aaKnown RBP13.7□□□□□ -0.22
TRIM3-211ENST00000532542 STRN4Q9NRL3 753 aa13.7□□□□□ -0.22
TRIM3-211ENST00000532542 ZBTB40Q9NUA8 1239 aa13.7□□□□□ -0.22
TRIM3-211ENST00000532542 BABAM1Q9NWV8 329 aa13.7□□□□□ -0.22
TRIM3-211ENST00000532542 USP32Q8NFA0 1604 aa13.7□□□□□ -0.22
TRIM3-211ENST00000532542 RILPL2Q969X0 211 aa13.69□□□□□ -0.22
TRIM3-211ENST00000532542 CHMP3Q9Y3E7 222 aa13.69□□□□□ -0.22
TRIM3-211ENST00000532542 MYO5BQ9ULV0 1848 aa13.69□□□□□ -0.22
TRIM3-211ENST00000532542 LRRC59Q96AG4 307 aaKnown RBP13.69□□□□□ -0.22
TRIM3-211ENST00000532542 USP35Q9P2H5 1018 aa13.69□□□□□ -0.22
TRIM3-211ENST00000532542 F6X3S4 739 aa13.68□□□□□ -0.22
TRIM3-211ENST00000532542 DBF4Q9UBU7 674 aaPredicted RBP13.68□□□□□ -0.22
TRIM3-211ENST00000532542 SURF6O75683 361 aaKnown RBP13.67□□□□□ -0.22
TRIM3-211ENST00000532542 IGSF1Q8N6C5 1336 aa13.67□□□□□ -0.22
TRIM3-211ENST00000532542 KIAA0232Q92628 1395 aa13.67□□□□□ -0.22
TRIM3-211ENST00000532542 KRT24Q2M2I5 525 aa13.67□□□□□ -0.22
TRIM3-211ENST00000532542 IFNL2Q8IZJ0 200 aa13.67□□□□□ -0.22
TRIM3-211ENST00000532542 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
TRIM3-211ENST00000532542 G3BP1Q13283 466 aaKnown RBP eCLIP13.67□□□□□ -0.22
TRIM3-211ENST00000532542 ST18O60284 1047 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 LRRCC1Q9C099 1032 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 CD163L1Q9NR16 1453 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 USP31Q70CQ4 1352 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 ADGRL3Q9HAR2 1447 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 CPS1P31327 1500 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 PTPRUQ92729 1446 aa13.66□□□□□ -0.22
TRIM3-211ENST00000532542 IFIT2P09913 472 aaKnown RBP13.65□□□□□ -0.22
TRIM3-211ENST00000532542 CHRNA2Q15822 529 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 ZNF853P0CG23 659 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 SMC5Q8IY18 1101 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 BRPF1P55201 1214 aaPredicted RBP13.65□□□□□ -0.22
TRIM3-211ENST00000532542 NUCB1Q02818 461 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 NBPF6Q5VWK0 638 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 NBPF4Q96M43 638 aa13.65□□□□□ -0.22
TRIM3-211ENST00000532542 DIP2AQ14689 1571 aa13.65□□□□□ -0.23
TRIM3-211ENST00000532542 ZBTB7BO15156 539 aaPredicted RBP13.64□□□□□ -0.23
TRIM3-211ENST00000532542 DDX54Q8TDD1 881 aaKnown RBP13.64□□□□□ -0.23
TRIM3-211ENST00000532542 ANP32BQ92688 251 aaKnown RBP13.64□□□□□ -0.23
TRIM3-211ENST00000532542 TMEM94Q12767 1356 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 KIF13AQ9H1H9 1805 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 CEP170BQ9Y4F5 1589 aaPredicted RBP13.64□□□□□ -0.23
TRIM3-211ENST00000532542 TAF7LQ5H9L4 462 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 DNAAF4Q8WXU2 420 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 HYPKQ9NX55 129 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 SLIT1O75093 1534 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 FER1L4A9Z1Z3 1794 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 ERC2O15083 957 aa13.64□□□□□ -0.23
TRIM3-211ENST00000532542 CLASRPQ8N2M8 674 aaKnown RBP13.64□□□□□ -0.23
TRIM3-211ENST00000532542 ARHGAP23Q9P227 1491 aa13.63□□□□□ -0.23
TRIM3-211ENST00000532542 ERC1Q8IUD2 1116 aa13.63□□□□□ -0.23
TRIM3-211ENST00000532542 ANKRD44Q8N8A2 993 aa13.63□□□□□ -0.23
TRIM3-211ENST00000532542 IQSEC2Q5JU85 1478 aa13.63□□□□□ -0.23
TRIM3-211ENST00000532542 LRRC7Q96NW7 1537 aa13.63□□□□□ -0.23
TRIM3-211ENST00000532542 SRGAP3O43295 1099 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 RUFY2Q8WXA3 655 aa13.62□□□□□ -0.23
TRIM3-211ENST00000532542 SYTL4Q96C24 671 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms