RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 VIRMAQ69YN4 1812 aaKnown RBP20.46■□□□□ 0.87
LSM1-203ENST00000520755 TNS2Q63HR2 1409 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 TATP17735 454 aaPredicted RBP20.46■□□□□ 0.87
LSM1-203ENST00000520755 PDE3BQ13370 1112 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 SULT6B1Q6IMI4 303 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 KRT27Q7Z3Y8 459 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 NUDCQ9Y266 331 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 KDRP35968 1356 aa20.46■□□□□ 0.87
LSM1-203ENST00000520755 OVOS2A0A0G2JMS6 1433 aa20.45■□□□□ 0.86
LSM1-203ENST00000520755 EXOC5O00471 708 aa20.45■□□□□ 0.86
LSM1-203ENST00000520755 HMOX1P09601 288 aa20.45■□□□□ 0.86
LSM1-203ENST00000520755 FAM182BQ5T319 152 aa20.43■□□□□ 0.86
LSM1-203ENST00000520755 U2AF1L5P0DN76 240 aaPredicted RBP20.41■□□□□ 0.86
LSM1-203ENST00000520755 U2AF1Q01081 240 aaKnown RBP eCLIP20.41■□□□□ 0.86
LSM1-203ENST00000520755 WDR43Q15061 677 aaKnown RBP eCLIP20.41■□□□□ 0.86
LSM1-203ENST00000520755 ZCRB1Q8TBF4 217 aaKnown RBP20.41■□□□□ 0.86
LSM1-203ENST00000520755 ADAMTS8Q9UP79 889 aa20.41■□□□□ 0.86
LSM1-203ENST00000520755 FAM9BQ8IZU0 186 aa20.4■□□□□ 0.86
LSM1-203ENST00000520755 DDX54Q8TDD1 881 aaKnown RBP20.4■□□□□ 0.86
LSM1-203ENST00000520755 RSPH6AQ9H0K4 717 aa20.4■□□□□ 0.86
LSM1-203ENST00000520755 MARCH10Q8NA82 808 aaPredicted RBP20.38■□□□□ 0.85
LSM1-203ENST00000520755 SBF2Q86WG5 1849 aa20.37■□□□□ 0.85
LSM1-203ENST00000520755 EP400Q96L91 3159 aa20.37■□□□□ 0.85
LSM1-203ENST00000520755 SPG7Q9UQ90 795 aa20.37■□□□□ 0.85
LSM1-203ENST00000520755 PCDH11XQ9BZA7 1347 aa20.36■□□□□ 0.85
LSM1-203ENST00000520755 PCDH11YQ9BZA8 1340 aa20.36■□□□□ 0.85
LSM1-203ENST00000520755 PLEKHF1Q96S99 279 aa20.36■□□□□ 0.85
LSM1-203ENST00000520755 KAT6BQ8WYB5 2073 aa20.36■□□□□ 0.85
LSM1-203ENST00000520755 PLEKHO1Q53GL0 409 aaPredicted RBP20.35■□□□□ 0.85
LSM1-203ENST00000520755 PLEKHG2Q9H7P9 1386 aa20.34■□□□□ 0.85
LSM1-203ENST00000520755 DOT1LQ8TEK3 1739 aa20.34■□□□□ 0.85
LSM1-203ENST00000520755 PRKAR2BP31323 418 aa20.34■□□□□ 0.85
LSM1-203ENST00000520755 FAM196AQ6ZSG2 479 aa20.34■□□□□ 0.85
LSM1-203ENST00000520755 CCDC146Q8IYE0 955 aa20.34■□□□□ 0.85
LSM1-203ENST00000520755 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.34■□□□□ 0.85
LSM1-203ENST00000520755 FCHSD2O94868 740 aa20.33■□□□□ 0.85
LSM1-203ENST00000520755 AMOTQ4VCS5 1084 aa20.33■□□□□ 0.85
LSM1-203ENST00000520755 CYP27B1O15528 508 aa20.32■□□□□ 0.84
LSM1-203ENST00000520755 ZNF530Q6P9A1 599 aaPredicted RBP20.32■□□□□ 0.84
LSM1-203ENST00000520755 ADAMTS7Q9UKP4 1686 aa20.32■□□□□ 0.84
LSM1-203ENST00000520755 SCN11AQ9UI33 1791 aa20.31■□□□□ 0.84
LSM1-203ENST00000520755 IFNL2Q8IZJ0 200 aa20.3■□□□□ 0.84
LSM1-203ENST00000520755 PHACTR3Q96KR7 559 aa20.3■□□□□ 0.84
LSM1-203ENST00000520755 TOGARAM1Q9Y4F4 1720 aa20.3■□□□□ 0.84
LSM1-203ENST00000520755 NHSQ6T4R5 1651 aa20.29■□□□□ 0.84
LSM1-203ENST00000520755 PHKG2P15735 406 aa20.29■□□□□ 0.84
LSM1-203ENST00000520755 MTHFSDQ2M296 383 aaKnown RBP20.29■□□□□ 0.84
LSM1-203ENST00000520755 RUNDC1Q96C34 613 aa20.29■□□□□ 0.84
LSM1-203ENST00000520755 TNS1Q9HBL0 1735 aaKnown RBP20.29■□□□□ 0.84
LSM1-203ENST00000520755 BCL9O00512 1426 aa20.28■□□□□ 0.84
LSM1-203ENST00000520755 TRIM37O94972 964 aa20.28■□□□□ 0.84
LSM1-203ENST00000520755 C1orf141Q5JVX7 400 aa20.28■□□□□ 0.84
LSM1-203ENST00000520755 ACSBG1Q96GR2 724 aa20.28■□□□□ 0.84
LSM1-203ENST00000520755 ITGB4P16144 1822 aa20.27■□□□□ 0.84
LSM1-203ENST00000520755 SIPA1L3O60292 1781 aaPredicted RBP20.27■□□□□ 0.84
LSM1-203ENST00000520755 NEFMP07197 916 aa20.27■□□□□ 0.84
LSM1-203ENST00000520755 PNNQ9H307 717 aaKnown RBP20.27■□□□□ 0.84
LSM1-203ENST00000520755 SENP3-EIF4A1A0A087X0R7 540 aa20.26■□□□□ 0.83
LSM1-203ENST00000520755 UPF1Q92900 1129 aaKnown RBP eCLIP20.26■□□□□ 0.83
LSM1-203ENST00000520755 MAPK8IP3Q9UPT6 1336 aa20.26■□□□□ 0.83
LSM1-203ENST00000520755 GAS2L2Q8NHY3 880 aa20.25■□□□□ 0.83
LSM1-203ENST00000520755 BTAF1O14981 1849 aa20.25■□□□□ 0.83
LSM1-203ENST00000520755 KCNQ2O43526 872 aa20.24■□□□□ 0.83
LSM1-203ENST00000520755 NKX1-1Q15270 411 aaPredicted RBP20.24■□□□□ 0.83
LSM1-203ENST00000520755 AKAP4Q5JQC9 854 aa20.24■□□□□ 0.83
LSM1-203ENST00000520755 SYTL4Q96C24 671 aaPredicted RBP20.24■□□□□ 0.83
LSM1-203ENST00000520755 SOCS7O14512 581 aa20.23■□□□□ 0.83
LSM1-203ENST00000520755 APAF1O14727 1248 aa20.23■□□□□ 0.83
LSM1-203ENST00000520755 HSP90AB1P08238 724 aaKnown RBP20.23■□□□□ 0.83
LSM1-203ENST00000520755 KDM6AO15550 1401 aaPredicted RBP20.22■□□□□ 0.83
LSM1-203ENST00000520755 PRIM1P49642 420 aaKnown RBP20.22■□□□□ 0.83
LSM1-203ENST00000520755 SF3B2Q13435 895 aaKnown RBP20.22■□□□□ 0.83
LSM1-203ENST00000520755 MPRIPQ6WCQ1 1025 aa20.22■□□□□ 0.83
LSM1-203ENST00000520755 PTF1AQ7RTS3 328 aa20.22■□□□□ 0.83
LSM1-203ENST00000520755 MAP3K5Q99683 1374 aa20.21■□□□□ 0.83
LSM1-203ENST00000520755 DCAF5Q96JK2 942 aa20.21■□□□□ 0.83
LSM1-203ENST00000520755 BCL11BQ9C0K0 894 aaPredicted RBP20.21■□□□□ 0.83
LSM1-203ENST00000520755 RRP7AQ9Y3A4 280 aaKnown RBP20.21■□□□□ 0.83
LSM1-203ENST00000520755 TMPOP42166 694 aaKnown RBP20.2■□□□□ 0.82
LSM1-203ENST00000520755 NFE2L2Q16236 605 aa20.2■□□□□ 0.82
LSM1-203ENST00000520755 CCDC125Q86Z20 511 aa20.2■□□□□ 0.82
LSM1-203ENST00000520755 GNAT3A8MTJ3 354 aa20.19■□□□□ 0.82
LSM1-203ENST00000520755 APBA3O96018 575 aa20.18■□□□□ 0.82
LSM1-203ENST00000520755 MRC1P22897 1456 aa20.18■□□□□ 0.82
LSM1-203ENST00000520755 HNRNPUQ00839 825 aaKnown RBP eCLIP20.17■□□□□ 0.82
LSM1-203ENST00000520755 LGR6Q9HBX8 967 aa20.17■□□□□ 0.82
LSM1-203ENST00000520755 KDM3BQ7LBC6 1761 aa20.16■□□□□ 0.82
LSM1-203ENST00000520755 RNMTO43148 476 aaKnown RBP20.16■□□□□ 0.82
LSM1-203ENST00000520755 TMOD3Q9NYL9 352 aa20.16■□□□□ 0.82
LSM1-203ENST00000520755 TRIM35Q9UPQ4 493 aa20.16■□□□□ 0.82
LSM1-203ENST00000520755 PAPPAQ13219 1627 aa20.16■□□□□ 0.82
LSM1-203ENST00000520755 ERVV-2B6SEH9 535 aa20.15■□□□□ 0.82
LSM1-203ENST00000520755 BAG6P46379 1132 aa20.15■□□□□ 0.82
LSM1-203ENST00000520755 CABP4P57796 275 aa20.15■□□□□ 0.82
LSM1-203ENST00000520755 DEFB132Q7Z7B7 95 aa20.15■□□□□ 0.82
LSM1-203ENST00000520755 RTF1Q92541 710 aaKnown RBP20.15■□□□□ 0.82
LSM1-203ENST00000520755 YTHDC1Q96MU7 727 aaKnown RBP20.15■□□□□ 0.82
LSM1-203ENST00000520755 ZNF521Q96K83 1311 aa20.15■□□□□ 0.82
LSM1-203ENST00000520755 RGPD3A6NKT7 1758 aaPredicted RBP20.14■□□□□ 0.81
LSM1-203ENST00000520755 RGPD4Q7Z3J3 1758 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms