RNA–Protein interactions for RNA: ENST00000517514.1

CLN8-202, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 4

Gene CLN8, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-202ENST00000517514 RBM6P78332 1123 aaKnown RBP13.22□□□□□ -0.29
CLN8-202ENST00000517514 PHACTR3Q96KR7 559 aa13.22□□□□□ -0.29
CLN8-202ENST00000517514 RGS12O14924 1447 aa13.22□□□□□ -0.29
CLN8-202ENST00000517514 IL2RBP14784 551 aa13.21□□□□□ -0.29
CLN8-202ENST00000517514 FCHSD2O94868 740 aa13.2□□□□□ -0.3
CLN8-202ENST00000517514 PRKAR2BP31323 418 aa13.2□□□□□ -0.3
CLN8-202ENST00000517514 TNS2Q63HR2 1409 aa13.2□□□□□ -0.3
CLN8-202ENST00000517514 EP400Q96L91 3159 aa13.19□□□□□ -0.3
CLN8-202ENST00000517514 RXRBP28702 533 aa13.19□□□□□ -0.3
CLN8-202ENST00000517514 TOGARAM1Q9Y4F4 1720 aa13.19□□□□□ -0.3
CLN8-202ENST00000517514 PLEKHG2Q9H7P9 1386 aa13.19□□□□□ -0.3
CLN8-202ENST00000517514 ADAMTS7Q9UKP4 1686 aa13.18□□□□□ -0.3
CLN8-202ENST00000517514 TATP17735 454 aaPredicted RBP13.18□□□□□ -0.3
CLN8-202ENST00000517514 WDR43Q15061 677 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLN8-202ENST00000517514 CCDC146Q8IYE0 955 aa13.18□□□□□ -0.3
CLN8-202ENST00000517514 SEPT12Q8IYM1 358 aa13.18□□□□□ -0.3
CLN8-202ENST00000517514 RAPGEF4Q8WZA2 1011 aa13.18□□□□□ -0.3
CLN8-202ENST00000517514 SBF2Q86WG5 1849 aa13.18□□□□□ -0.3
CLN8-202ENST00000517514 CYP27B1O15528 508 aa13.17□□□□□ -0.3
CLN8-202ENST00000517514 MTHFSDQ2M296 383 aaKnown RBP13.17□□□□□ -0.3
CLN8-202ENST00000517514 FAM9BQ8IZU0 186 aa13.17□□□□□ -0.3
CLN8-202ENST00000517514 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
CLN8-202ENST00000517514 MARCH10Q8NA82 808 aaPredicted RBP13.16□□□□□ -0.3
CLN8-202ENST00000517514 ZCRB1Q8TBF4 217 aaKnown RBP13.16□□□□□ -0.3
CLN8-202ENST00000517514 CDCA7Q9BWT1 371 aaPredicted RBP13.16□□□□□ -0.3
CLN8-202ENST00000517514 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLN8-202ENST00000517514 DDB1Q16531 1140 aa13.15□□□□□ -0.3
CLN8-202ENST00000517514 RUNDC1Q96C34 613 aa13.15□□□□□ -0.3
CLN8-202ENST00000517514 DOT1LQ8TEK3 1739 aa13.14□□□□□ -0.31
CLN8-202ENST00000517514 ITGB4P16144 1822 aa13.14□□□□□ -0.31
CLN8-202ENST00000517514 EXOC5O00471 708 aa13.14□□□□□ -0.31
CLN8-202ENST00000517514 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
CLN8-202ENST00000517514 SIPA1L3O60292 1781 aaPredicted RBP13.14□□□□□ -0.31
CLN8-202ENST00000517514 KDM6AO15550 1401 aaPredicted RBP13.13□□□□□ -0.31
CLN8-202ENST00000517514 SENP3-EIF4A1A0A087X0R7 540 aa13.13□□□□□ -0.31
CLN8-202ENST00000517514 PHKG2P15735 406 aa13.13□□□□□ -0.31
CLN8-202ENST00000517514 AMOTQ4VCS5 1084 aa13.13□□□□□ -0.31
CLN8-202ENST00000517514 FAM182BQ5T319 152 aa13.13□□□□□ -0.31
CLN8-202ENST00000517514 ZNF530Q6P9A1 599 aaPredicted RBP13.13□□□□□ -0.31
CLN8-202ENST00000517514 APAF1O14727 1248 aa13.12□□□□□ -0.31
CLN8-202ENST00000517514 TMPOP42166 694 aaKnown RBP13.12□□□□□ -0.31
CLN8-202ENST00000517514 NKX1-1Q15270 411 aaPredicted RBP13.12□□□□□ -0.31
CLN8-202ENST00000517514 NFE2L2Q16236 605 aa13.12□□□□□ -0.31
CLN8-202ENST00000517514 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
CLN8-202ENST00000517514 SPG7Q9UQ90 795 aa13.12□□□□□ -0.31
CLN8-202ENST00000517514 PCDH11XQ9BZA7 1347 aa13.12□□□□□ -0.31
CLN8-202ENST00000517514 PCDH11YQ9BZA8 1340 aa13.12□□□□□ -0.31
CLN8-202ENST00000517514 A0A0G2JS52 829 aa13.11□□□□□ -0.31
CLN8-202ENST00000517514 MYT1Q01538 1121 aa13.11□□□□□ -0.31
CLN8-202ENST00000517514 RRP7AQ9Y3A4 280 aaKnown RBP13.11□□□□□ -0.31
CLN8-202ENST00000517514 NHSQ6T4R5 1651 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 AKAP4Q5JQC9 854 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 KRT27Q7Z3Y8 459 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 IFNL2Q8IZJ0 200 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 GAS2L2Q8NHY3 880 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 LGR6Q9HBX8 967 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 TRIM35Q9UPQ4 493 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 BCL9O00512 1426 aa13.1□□□□□ -0.31
CLN8-202ENST00000517514 MAP3K5Q99683 1374 aa13.09□□□□□ -0.31
CLN8-202ENST00000517514 ILDR2Q71H61 639 aa13.09□□□□□ -0.31
CLN8-202ENST00000517514 IL17REQ8NFR9 667 aa13.09□□□□□ -0.31
CLN8-202ENST00000517514 PNNQ9H307 717 aaKnown RBP13.09□□□□□ -0.31
CLN8-202ENST00000517514 MRC1P22897 1456 aa13.09□□□□□ -0.31
CLN8-202ENST00000517514 MAPK8IP3Q9UPT6 1336 aa13.09□□□□□ -0.31
CLN8-202ENST00000517514 CEMIPQ8WUJ3 1361 aa13.08□□□□□ -0.31
CLN8-202ENST00000517514 PDE3BQ13370 1112 aa13.08□□□□□ -0.32
CLN8-202ENST00000517514 DCTN1Q14203 1278 aa13.08□□□□□ -0.32
CLN8-202ENST00000517514 MPRIPQ6WCQ1 1025 aa13.08□□□□□ -0.32
CLN8-202ENST00000517514 PTF1AQ7RTS3 328 aa13.08□□□□□ -0.32
CLN8-202ENST00000517514 TNS1Q9HBL0 1735 aaKnown RBP13.08□□□□□ -0.32
CLN8-202ENST00000517514 GNAT3A8MTJ3 354 aa13.07□□□□□ -0.32
CLN8-202ENST00000517514 RNMTO43148 476 aaKnown RBP13.07□□□□□ -0.32
CLN8-202ENST00000517514 RIPK4P57078 832 aa13.07□□□□□ -0.32
CLN8-202ENST00000517514 KAT6BQ8WYB5 2073 aa13.07□□□□□ -0.32
CLN8-202ENST00000517514 BTAF1O14981 1849 aa13.06□□□□□ -0.32
CLN8-202ENST00000517514 PAPPAQ13219 1627 aa13.06□□□□□ -0.32
CLN8-202ENST00000517514 NEUROD2Q15784 382 aa13.06□□□□□ -0.32
CLN8-202ENST00000517514 MCM10Q7L590 875 aa13.06□□□□□ -0.32
CLN8-202ENST00000517514 THUMPD2Q9BTF0 503 aaKnown RBP13.06□□□□□ -0.32
CLN8-202ENST00000517514 KCNQ2O43526 872 aa13.05□□□□□ -0.32
CLN8-202ENST00000517514 HTATSF1O43719 755 aaKnown RBP13.05□□□□□ -0.32
CLN8-202ENST00000517514 C1orf141Q5JVX7 400 aa13.05□□□□□ -0.32
CLN8-202ENST00000517514 DCAF5Q96JK2 942 aa13.05□□□□□ -0.32
CLN8-202ENST00000517514 ZNF521Q96K83 1311 aa13.05□□□□□ -0.32
CLN8-202ENST00000517514 KDM3BQ7LBC6 1761 aa13.04□□□□□ -0.32
CLN8-202ENST00000517514 NCBP3Q53F19 620 aaKnown RBP13.04□□□□□ -0.32
CLN8-202ENST00000517514 ACSBG1Q96GR2 724 aa13.04□□□□□ -0.32
CLN8-202ENST00000517514 UBR2Q8IWV8 1755 aa13.03□□□□□ -0.32
CLN8-202ENST00000517514 NEFMP07197 916 aa13.03□□□□□ -0.32
CLN8-202ENST00000517514 HSP90AB1P08238 724 aaKnown RBP13.03□□□□□ -0.32
CLN8-202ENST00000517514 PRIM1P49642 420 aaKnown RBP13.03□□□□□ -0.32
CLN8-202ENST00000517514 CCDC27Q2M243 656 aa13.03□□□□□ -0.32
CLN8-202ENST00000517514 FAM196AQ6ZSG2 479 aa13.03□□□□□ -0.32
CLN8-202ENST00000517514 WWC1Q8IX03 1113 aa13.03□□□□□ -0.32
CLN8-202ENST00000517514 SALL2Q9Y467 1007 aaPredicted RBP13.03□□□□□ -0.32
CLN8-202ENST00000517514 ERVV-2B6SEH9 535 aa13.02□□□□□ -0.33
CLN8-202ENST00000517514 SLC52A2Q9HAB3 445 aa13.02□□□□□ -0.33
CLN8-202ENST00000517514 LY75O60449 1722 aa13.02□□□□□ -0.33
CLN8-202ENST00000517514 NFATC2IPQ8NCF5 419 aa13.01□□□□□ -0.33
CLN8-202ENST00000517514 PIGBQ92521 554 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms